View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_high_3 (Length: 542)
Name: NF2452_high_3
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Original strand, 34787829 - 34788337
Alignment:
| Q |
16 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787829 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggatcgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
34787928 |
T |
|
| Q |
116 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787929 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
34788028 |
T |
|
| Q |
216 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788029 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
34788128 |
T |
|
| Q |
316 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgttt |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788129 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgttt |
34788228 |
T |
|
| Q |
416 |
gcggagtttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatc |
515 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788229 |
gcggagtttgaggaaaggtgtaaggaggtagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatc |
34788328 |
T |
|
| Q |
516 |
ggaagtttg |
524 |
Q |
| |
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||||||||| |
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| T |
34788329 |
ggaagtttg |
34788337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Complemental strand, 2293368 - 2292855
Alignment:
| Q |
16 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
2293368 |
tgagatgaagaataagtttattaaccatgcgaggaatgtttgggatcgcgctgttactcttttgccacgagtggatcagttgtggtataagtatattcat |
2293269 |
T |
|
| Q |
116 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
2293268 |
atggaggagatgcttggcaatgttgcgggggcgagacaggtttttgagagatggatgaaatggatgccggatcagcaaggatggctatcttatataaaat |
2293169 |
T |
|
| Q |
216 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
315 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
2293168 |
ttgagctgagatataatgagattgaacgagctagagggattttcgagagatttgtattgtgtcatcctagggttggtgcttggatacgttatgcgaagtt |
2293069 |
T |
|
| Q |
316 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtgg---agctagcggatgatgaggaagcagagctgctttttgtggcg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
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| T |
2293068 |
tgagatgaagaatggcgaggttcctaaggcgaggaatgtttatgaaagagcggtggagaagcttgcggatgatgaggaagctgagctgctttttgtggct |
2292969 |
T |
|
| Q |
413 |
tttgcggagtttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2292968 |
tttgcggagtttgaggaaaggtgtaaggaggctgagcgggcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggatttgt |
2292869 |
T |
|
| Q |
513 |
atcggaagtttgtg |
526 |
Q |
| |
|
|||||||||||||| |
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| T |
2292868 |
atcggaagtttgtg |
2292855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 33636021 - 33635664
Alignment:
| Q |
16 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
115 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||||||| || ||||| |||| |||||| |||||||| |||| ||||||||| |||| || ||| |
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|
| T |
33636021 |
tgagatgaagaatagattcgtcaatcatgcaaggaatgtttacgatcgcgctgttattcttttaccgcgggtccatcaattgtggtatgagtacatacat |
33635922 |
T |
|
| Q |
116 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
215 |
Q |
| |
|
|||||| |||| ||||||||||| || || | || |||||||||||| |||||| | |||||||| |||||||| | |||| | ||||| ||||||| |
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| T |
33635921 |
atggagaagattcttggcaatgtcgccggagttagagaggttttcgagaggtggatggaatggatgcctgatcagcatgcatggctctcttacataaaat |
33635822 |
T |
|
| Q |
216 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
315 |
Q |
| |
|
||| || | || ||||| || ||||| ||||| ||||||||| |||||| ||||||||||| |||||||||||| | |||||||| || || |
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| T |
33635821 |
atgaactaaagtacaatgaaatcgaacgacttagaggaattttcgagctttttgttacatgtcatcctagtgttggtgcttggttacgttatgcgaaatt |
33635722 |
T |
|
| Q |
316 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtggag |
373 |
Q |
| |
|
||||||||||||||| || ||||||| ||| || | ||||||||||||||| |||||| |
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|
| T |
33635721 |
tgagatgaagaatggtgaagttcctagggcaagaagtgtttatgaaagagctgtggag |
33635664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 422 - 526
Target Start/End: Complemental strand, 2598110 - 2598006
Alignment:
| Q |
422 |
tttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatcggaagt |
521 |
Q |
| |
|
|||| |||||||||||| ||||||| | |||||| |||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||| |||| | |
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| T |
2598110 |
tttgtggaaaggtgtaatgaggcagagtgtgcgatgtgtatttataaatttccaattgattatattccgaaggggagggctgaggatttgtatgggaaat |
2598011 |
T |
|
| Q |
522 |
ttgtg |
526 |
Q |
| |
|
||||| |
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|
| T |
2598010 |
ttgtg |
2598006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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