View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2452_high_5 (Length: 510)
Name: NF2452_high_5
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 225 - 508
Target Start/End: Complemental strand, 3422423 - 3422140
Alignment:
| Q |
225 |
tttattgtccaaataacatttctgatttaaattaggtgtaacaaaatattgaaacctgatctatagacttgtccttaatatttgtcactttcttgattga |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3422423 |
tttattgtccaaataacatttctgatttaaattaggtgtaacaaaagattgaaacctgatctatagacttgtccttaatatttgtcactttcttgattga |
3422324 |
T |
|
| Q |
325 |
gatgatccttgggtaaagcctttgtagatcttccaatgaagtgataaccatctgcaatatgacatatatgaaagacaatgttataaacgaggcaagaaca |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3422323 |
gatgatccttgggtaaagcctttgtagatcttccaatgaagtgataaccatctgcaatatgacatatatgaaagacaatgttataaacgaggcaagaaca |
3422224 |
T |
|
| Q |
425 |
ttttgtgttacttcaacatgaagaaaagtaaaaagtacctctcttaaggaagcagaagtgttcataggagcaaggtccatgatg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3422223 |
ttttgtgttacttcaacatgaagaaaagtaaaaagtacctctcttaaggaagcagaagtgttcaaaggagcaaggtccatgatg |
3422140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 3422641 - 3422478
Alignment:
| Q |
11 |
cacagaagtatgctaaaccctaacgaaatactgtctacatttagtattttaggataacaataatatcatcattgaacgtttaatttgag----taatgtt |
106 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3422641 |
cacacaagtatgccaaaccctaacgaaatactgtctacatttagtattttaggataacaataatatcatcattgaacgtttaatttgagtaattaatgtt |
3422542 |
T |
|
| Q |
107 |
atttgaacacaaaaaattcaatatcatattctgacccggtataaaaatacaccacttatagccg |
170 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3422541 |
atttgaacacaaaaaatccaatatcatattctgaccccttataaaaatacaccacttatagccg |
3422478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University