View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_high_7 (Length: 424)
Name: NF2452_high_7
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 38374997 - 38375377
Alignment:
| Q |
11 |
caaaggacatttgggaatatgttggattagatgagagatacctgatcttccgccacaagtaaacagtttcccacaagtcatacactcacacatttctttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38374997 |
caaaggacatttgggaatatgttggattagatgagagatacctgatcttccgccac------------------aagtcatacactcacacatttctttt |
38375078 |
T |
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| Q |
111 |
ccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcagaatcaccgtcaccagaatatgctgagttac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38375079 |
ccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcagaatcaccgtcaccagaatatgctgagttac |
38375178 |
T |
|
| Q |
211 |
aagtttgtaaaatttgacattcattcccaacgccacatctctcattgttgcaatccatactgcaaaaatagtcaaacaaacatataaatacacaaaacat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38375179 |
aagtttgtaaaatttgacattcattcccaacgccacatctctcattgttgcaatccatactgcaaaaatagtcaaacaaacatataaatactcaaaacat |
38375278 |
T |
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| Q |
311 |
gccacattcaaaactcattagcgcatatagcattacacacaaagacaatgctgagtattaattttactcgctaacaccgagatagcagaccattgaagt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38375279 |
gccacattcaaaactcattagcgcatatagcattacacacaaagacaatgctgagtattaattttactcgctgacaccgagatagcagaccattgaagt |
38375377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 38380170 - 38380361
Alignment:
| Q |
11 |
caaaggacatttgggaatatgttggattagatgagagatacctgatcttccgccacaagtaaacagtttcccacaagtcatacactcacacatttctttt |
110 |
Q |
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|||||||||| |||||||||| || ||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
38380170 |
caaaggacatacgggaatatgtaggtttagatgagagttacctgaccttccatcacaagtaaacactctcccacaagtcatacattcacacatttctttt |
38380269 |
T |
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| Q |
111 |
ccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcagaatcaccgtcaccagaatatgc |
202 |
Q |
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|||| ||||| || ||||||||||||||||||||||||||||||||||||| | || ||||| ||||| |||||||| | | |||||||||| |
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| T |
38380270 |
ccatctttatgaactttgacaaagtagttccaaacattaaaccttttaagccttttctttggaggttcggaatcaccataatcagaatatgc |
38380361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 38370277 - 38370477
Alignment:
| Q |
11 |
caaaggacatttgggaatatgttgga------ttagatgagagatacctgatcttccgccacaagtaaacagtttcccacaagtcatacactcacacatt |
104 |
Q |
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|||||||||||||| ||||||||||| |||||||||| ||||||| ||||| | || ||||| ||||||||||||| |||| ||||||| | |
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| T |
38370277 |
caaaggacatttggtaatatgttggacttggtttagatgagatatacctgtccttcc---agaaataaactgtttcccacaagttttacattcacacagt |
38370373 |
T |
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| Q |
105 |
tcttttccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcagaatcaccgtcaccagaatatgctg |
204 |
Q |
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||||| |||| | | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||| |
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| T |
38370374 |
tctttaccatctgcttcaattttaacaaagtagttccaaacattaaaccttttaagcttcttatttggtggttcatgatcac---catcagaatatgctg |
38370470 |
T |
|
| Q |
205 |
agttaca |
211 |
Q |
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||||||| |
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| T |
38370471 |
agttaca |
38370477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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