View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_1 (Length: 1151)
Name: NF2452_low_1
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 359 - 860
Target Start/End: Original strand, 15871179 - 15871680
Alignment:
| Q |
359 |
ttgaatgcactaatacttgaaatttaactctttctcaattttccctatttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtg |
458 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15871179 |
ttgaatgaactaatacttgaaatttaactttttctgaattttcactctttacaggcttcgtgaacttcatacccttaaaggacatgttgaatctgttgtg |
15871278 |
T |
|
| Q |
459 |
aagctgaaaggacttgacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
558 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15871279 |
aagctgaaaggactggacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
15871378 |
T |
|
| Q |
559 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
658 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15871379 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
15871478 |
T |
|
| Q |
659 |
agaagttttagtttcaatcaaatattatatggttctatatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
758 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15871479 |
agaagttttagtttcaatcaaatattatatgcttctctatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
15871578 |
T |
|
| Q |
759 |
ttgggaaacttgtgtgaataagcattatgaaaaatttcaacatggtctcaactcattctcatgttatttttgtcttttggaaacacaatgacaagcaaat |
858 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
15871579 |
ttgggaaacttgtgtgaataagcattatgaaaattttcaacatggtagcaactcattttcatgttatttttgtcttttgggaacactatgacaagcaaat |
15871678 |
T |
|
| Q |
859 |
ac |
860 |
Q |
| |
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|| |
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|
| T |
15871679 |
ac |
15871680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 41 - 367
Target Start/End: Original strand, 15870805 - 15871131
Alignment:
| Q |
41 |
atgtgtgttttagactgccttcaccaataaaaaggactatggaaaagaggagagggaagctcaatgggcacatgctcaaaggacccttcatggactttca |
140 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15870805 |
atgtgtgttttagactgcctttaccaataaaaaggactacggaaaagaggagagggaagctcaatgggcacatgctcaaaggacccttcatggactttca |
15870904 |
T |
|
| Q |
141 |
gcaccacaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgagcaggctaagcgacgcgctgaagttgctaggt |
240 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15870905 |
gcaccagaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgagcaggctaagcgacgcgctgaagttgctaggt |
15871004 |
T |
|
| Q |
241 |
aagcaataacaacatacctagattacgagattttcacgatgattattactttctatcgtctcgtacataagcaacaaaaatagttaatatcgtttaattt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15871005 |
aagcaataacaacatacctagattacgagattttcacgatgattattactttctatcgtctcgtacataagcaacaaaaatagttaatatcgtttaattt |
15871104 |
T |
|
| Q |
341 |
tcatgacgtagtataacattgaatgca |
367 |
Q |
| |
|
|||||||||| |||||||||||||||| |
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| T |
15871105 |
tcatgacgtaatataacattgaatgca |
15871131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 872 - 1134
Target Start/End: Original strand, 15871728 - 15871987
Alignment:
| Q |
872 |
cgaccgataaagaattgattcataccttacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatccttattct |
971 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15871728 |
cgaccgataaagaattgattcatacctcacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatgtttattct |
15871827 |
T |
|
| Q |
972 |
gagtttttatgcctgcctagatgaacctccaggaccaaactcgcaaaaacnnnnnnnnncttagaaaaagagcgtaagaaagtaatctttaattaagtgc |
1071 |
Q |
| |
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||||||||||||||| | ||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||| | |
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| T |
15871828 |
gagtttttatgcctgtc-cgatgagcctccaggaccaaactcgcaaaaac--tttttttcttaaaaaaagagcataagaaagtaatctttaatcaagtac |
15871924 |
T |
|
| Q |
1072 |
ctcttttgagctttgacgtttgtcttaactagcctctgggtctcaacttgcatacaattatac |
1134 |
Q |
| |
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|||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
15871925 |
ctcttttgagctttgatgtttgtcttagctagcctctgagtctcaacttgcatacaattatac |
15871987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 45196005 - 45195920
Alignment:
| Q |
420 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
505 |
Q |
| |
|
|||||||| || || |||||||||||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||||||| |
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| T |
45196005 |
gagcttcacacactgaaaggacatgttgagtctgttgtaaaactcaagggacttgacattgagacaatccaacaacactacactgt |
45195920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 6e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 53074160 - 53073970
Alignment:
| Q |
52 |
agactgccttcaccaataaaaaggactatggaaaagaggagagggaagctcaatgggcacatgctcaaaggacccttcatggactttcagcaccacaaga |
151 |
Q |
| |
|
||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||| ||||| ||| |
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| T |
53074160 |
agactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggcacatgctcagaggactctacatggac-ttca--accaccaga |
53074064 |
T |
|
| Q |
152 |
aacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgagcaggctaagcgacgcgctgaagttgctaggtaagca |
245 |
Q |
| |
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|| |||| || | |||||||| |||| || ||| |||||| |||| |||||||||||||| || ||| || | ||||||||||| ||||||||| |
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| T |
53074063 |
aagttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgagcaagcgaagagaagagctgaagttgcaaggtaagca |
53073970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 406 - 469
Target Start/End: Complemental strand, 53073875 - 53073812
Alignment:
| Q |
406 |
tttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaagg |
469 |
Q |
| |
|
|||||||||||||||||||||| || || || ||||||||||||||||| |||||||||||||| |
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| T |
53073875 |
tttacaggcttcgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaagg |
53073812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 420 - 502
Target Start/End: Complemental strand, 48434949 - 48434867
Alignment:
| Q |
420 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacac |
502 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||| |||||| |||| || |||||||| || || || |||||||| ||||| |
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|
| T |
48434949 |
gagctccatacactcaagggacatgttgaatctgtggtgaagttgaagggtcttgacattgatacgattcaacaacactacac |
48434867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 50278288 - 50278384
Alignment:
| Q |
409 |
acaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
505 |
Q |
| |
|
|||||||| | |||||||| || || || || || |||||||| || |||||||| || |||||||| || || ||||||||||||||||| ||||| |
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|
| T |
50278288 |
acaggcttagggagcttcacacactaaagggtcacgttgaatcagtcgtgaagcttaagggacttgatatcgacactatgcaacaacattatactgt |
50278384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 50277993 - 50278074
Alignment:
| Q |
52 |
agactgccttcaccaataaaaaggactatggaaaagaggagagggaagctcaatgggcacatgctcaaaggacccttcatgg |
133 |
Q |
| |
|
||||||||||||| | || || |||||||| ||||| ||||| |||||||| |||||| |||||| ||||| |||||||| |
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|
| T |
50277993 |
agactgccttcacaacaaagaaagactatggcaaagaagagagagaagctcagtgggcaactgctcagaggactcttcatgg |
50278074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 1495453 - 1495396
Alignment:
| Q |
52 |
agactgccttcaccaataaaaaggactatggaaaagaggagagggaagctcaatgggc |
109 |
Q |
| |
|
||||||||||||| | || || |||||||||||||| ||||||||||| |||||||| |
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|
| T |
1495453 |
agactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggc |
1495396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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