View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_10 (Length: 419)
Name: NF2452_low_10
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 32164717 - 32164935
Alignment:
| Q |
19 |
gtttggcaatgaagtggaaaaaacatagctgatgtattatcctgcagtagccagaataaagagaggtgagattctttcatggcagaaatttcaaaccaag |
118 |
Q |
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| T |
32164717 |
gtttggcaatgaagtggaaaaaacatagctgatgtattatcctgcagtagccagaataaagagaggtgagattctttcatggcagaaatttcaaaccaag |
32164816 |
T |
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| Q |
119 |
tatttagtacatattagcatgaaattttattcaacatgtccatatatatttccattttggagtatggacagaggtgattattttcttaaactgcataaaa |
218 |
Q |
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| T |
32164817 |
tatttagtacatattagcatgaaattttattcaacatgtccatatatatttccattttggagtatggacagaggtgattattttcttaaactgcataaaa |
32164916 |
T |
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| Q |
219 |
tcataaaaagaggaaccat |
237 |
Q |
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||||||||||||||||||| |
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| T |
32164917 |
tcataaaaagaggaaccat |
32164935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 234 - 407
Target Start/End: Original strand, 32165296 - 32165468
Alignment:
| Q |
234 |
ccattaagaacctgcaaaaccagcaaattaaagtagttttaatgagcaaaaatcttagaactagtgaagaagaaataaagcaaaggcaaaattcttaaaa |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32165296 |
ccattaagaacctgcaaaaccagcaaattaaagtagttttaatgagcaaaaatctta-aactagtgaagaagaaataaagcaaaggcaaaactcttaaaa |
32165394 |
T |
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| Q |
334 |
tttatagtttcacattacttcctaaaatgacaataaacatcaaaatagacaagtctttaactatatcacaggtt |
407 |
Q |
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| T |
32165395 |
tttatagtttcacattacttcctaaaatgacaataaacatcaaaatagacaagtctttaactatgtcacaggtt |
32165468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 11343850 - 11343795
Alignment:
| Q |
20 |
tttggcaatgaagtggaaaaaacatagctgatgtattatcctgcagtagccagaat |
75 |
Q |
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| T |
11343850 |
tttggcaatgaagcagaaaacacatagctgatgtattgtcctgcagtagccagaat |
11343795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 1833611 - 1833669
Alignment:
| Q |
20 |
tttggcaatgaagtggaaaaaacatagctgatgtattatcctgcagtagccagaataaa |
78 |
Q |
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|||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||||| |
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| T |
1833611 |
tttggcaatgaagtagaaaatacatagctgatgtagtgtcctgcagtagccataataaa |
1833669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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