View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_13 (Length: 377)
Name: NF2452_low_13
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 29005525 - 29005163
Alignment:
| Q |
18 |
aactataccatactcactcctttaactttcttgatgagagcttctgcatcttatgcaaaccgtacctcagtcatccatgaaggtacccggttcacttggt |
117 |
Q |
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| T |
29005525 |
aactataccatactcactcctttaactttcttgatgagagcttctgcatcttatgcaaaccgtacctcagtcatccatgaaggaacccggttcacttggt |
29005426 |
T |
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| Q |
118 |
cacaaacttatgaccggtgtcgccgcctcgcttcctccctccgtgctctcaatattgcaaagaatgatgttgtaagttcgtcactaaatcgtgtttttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29005425 |
cacaaacttatgaccggtgtcgccgcctcgcttcctccctccgtgctctcaatattgcaaagaatgatgttgtaagttcgtcactaaatcgtgtttttct |
29005326 |
T |
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| Q |
218 |
agtagtacataaacatcaacgtatataagtattaaaatctcaataaaaattcttgcatgcatatat----atatgatccatatttttaaaaatgtttttg |
313 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
29005325 |
agtagtacacaaacatcaacgtatataagtaataaaatctcaataaaagttcatgcattcatatatatatatatgatccatatttttaaaaatgtttttg |
29005226 |
T |
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| Q |
314 |
caactataatc----------attgcaattttttcgcaataatttaaaatgttacatgttcat |
366 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29005225 |
caactataatcattgtatttgattgcaattttttcgcagtaatttaaaatgttacatgttcat |
29005163 |
T |
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