View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2452_low_15 (Length: 318)

Name: NF2452_low_15
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2452_low_15
NF2452_low_15
[»] chr1 (1 HSPs)
chr1 (6-301)||(35047151-35047444)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 35047151 - 35047444
Alignment:
Q  6 gacatcatcattccatttgaatttcttccattcgtcgacatttccatcataatggaaaagcgtgacagtgaaattacttgctagaaactgcaatttggtg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35047151 gacatcatcattccatttgaatttcttccattcgtcgacatttccatcataatggaaaagcgtgacagtgaaattacttgctagaaactgcaatttggtg 35047250  T
Q  106 tagaaagagggtcatgatccacggattaaacagagtattagtaatgagaaatttggacaaaaaactcattaaaggacctttttgaccatcttgtcaacta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  35047251 tagaaagagggtcatgatccacggattaaacagagtattagtaatgagaaatttggac--aaaactcattgaaggacctttttgaccatcttgtcaacta 35047348  T
Q  206 aatctttctgctttattccaaccgccattgcaaacaggctggttgatggttttaccttaacctgctcaaatgtgagcaattagtaaacatgagaat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35047349 aatctttctgctttattccaaccgccattgcaaacaggctggttgatggctttaccttaacctgctcaaatgtgagcaattagtaaacatgagaat 35047444  T

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