View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_17 (Length: 266)
Name: NF2452_low_17
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 1703036 - 1702911
Alignment:
| Q |
20 |
ctgtaaacccatttgcaccctataagatttgtagcttgaggttgaggtaccaactcccatgtgccttgttggattaaagcatcaaattcttcactcattg |
119 |
Q |
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| T |
1703036 |
ctgtaaacccatttgcaccctataagatttgtagcttgaggttgaggtaccaactcccatgtgccttgttggattaaagcatcaaattctgcactcattg |
1702937 |
T |
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| Q |
120 |
cattgcgccattcactggatttgagg |
145 |
Q |
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| T |
1702936 |
cattgcgccattcactagatttgagg |
1702911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 1702885 - 1702766
Alignment:
| Q |
140 |
ttgaggaggctaatggatgttttgtagtaaggagatattttggattaggcttgtgtatttggttcacggaccttgtaactatgcgagaagatttcggtga |
239 |
Q |
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| T |
1702885 |
ttgaggaggctattggatgctttgtagtaaggagatattttggattaggcttgtgtatttggttcacggaccttgtaactatgcgagaagattccggaga |
1702786 |
T |
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| Q |
240 |
cgggtgtggtgttgatgatg |
259 |
Q |
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| T |
1702785 |
cgggtgcggtgttgatgatg |
1702766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 20625106 - 20625192
Alignment:
| Q |
20 |
ctgtaaacccatttgcaccctataagatttgtagcttgaggttgaggtaccaactcccatgtgccttgttggattaaagcatcaaat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20625106 |
ctgtaaacccatttgcaccctataagatttgtagcttgaggttgaggtaccaactcccatgtgccttgttggattaaagcatcaaat |
20625192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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