View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_18 (Length: 263)
Name: NF2452_low_18
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 16948066 - 16948303
Alignment:
| Q |
13 |
tcatcactagtgcttaagggtaatgttgcgttgctggtaatcatacgtctgtcactttctgcacctctttggctgttaagaagctcatcttgttttttct |
112 |
Q |
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| T |
16948066 |
tcatcactagtgcttaagggtaatgttgcgttgctgataatcatacgtctgtcactttctgcacctctttggctgttaagaagctcatcttgttttttct |
16948165 |
T |
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| Q |
113 |
ttaatgcagattgtctctgccaaatcaaaaattacttttaatgctctcttcataagttaattactgttagaacagaaagccggttcaaaagtaacataaa |
212 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16948166 |
ttaatgcagattgtctctgcgaaataaaaaattacttttaatgctctctccataagttaattactgttagaacagaaagccggttcaaaagtaacataaa |
16948265 |
T |
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| Q |
213 |
tacgaaagaactgcaaatacagaacagacaatatttgt |
250 |
Q |
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| T |
16948266 |
tacgaaagaactgcaaatagagaacagacaatatttgt |
16948303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 17018731 - 17018968
Alignment:
| Q |
13 |
tcatcactagtgcttaagggtaatgttgcgttgctggtaatcatacgtctgtcactttctgcacctctttggctgttaagaagctcatcttgttttttct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17018731 |
tcatcactagtgcttaagggtaatgttgcgttgctgataatcatacgtctgtcactttctgcacctctttggctgttaagaagctcatcttgttttttct |
17018830 |
T |
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| Q |
113 |
ttaatgcagattgtctctgccaaatcaaaaattacttttaatgctctcttcataagttaattactgttagaacagaaagccggttcaaaagtaacataaa |
212 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17018831 |
ttaatgcagattgtctctgcgaaataaaaaattacttttaatgctctctccataagttaattactgttagaacagaaagccggttcaaaagtaacataaa |
17018930 |
T |
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| Q |
213 |
tacgaaagaactgcaaatacagaacagacaatatttgt |
250 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
17018931 |
tacgaaagaactgcaaatagagaacagacaatatttgt |
17018968 |
T |
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