View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2452_low_19 (Length: 263)
Name: NF2452_low_19
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 52001745 - 52001528
Alignment:
| Q |
30 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52001745 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgtcgatgaatcccttact |
52001646 |
T |
|
| Q |
130 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52001645 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
52001546 |
T |
|
| Q |
230 |
gacttgcttcgctcgatg |
247 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
52001545 |
gacttgcttcgcttgatg |
52001528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 52011610 - 52011409
Alignment:
| Q |
30 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
129 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||| ||||||||||||| ||||||||| | |||||||| |||| ||| ||||| | |||||| ||| | |
|
|
| T |
52011610 |
tgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatt |
52011511 |
T |
|
| Q |
130 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
229 |
Q |
| |
|
|||||| | ||| || || |||||||| ||||||| ||| || | |||||||| ||| |||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
52011510 |
tgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatg |
52011411 |
T |
|
| Q |
230 |
ga |
231 |
Q |
| |
|
|| |
|
|
| T |
52011410 |
ga |
52011409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 51987888 - 51988100
Alignment:
| Q |
30 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
129 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| | ||||||||||||||| |||| | ||||||| |||| ||| ||||||||||||| |||| | |
|
|
| T |
51987888 |
tgatgatggttctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatt |
51987987 |
T |
|
| Q |
130 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
229 |
Q |
| |
|
||| ||||||| | |||| |||||||| | | | |||| || ||||||||||| ||| |||| ||| ||||| |||||||| || |||| ||||| |
|
|
| T |
51987988 |
tggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatg |
51988087 |
T |
|
| Q |
230 |
gacttgcttcgct |
242 |
Q |
| |
|
|||||||||| |
|
|
| T |
51988088 |
ccattgcttcgct |
51988100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 11749419 - 11749218
Alignment:
| Q |
30 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
129 |
Q |
| |
|
|||||||| |||||||||||||||||| || || ||||||||||||||||||||||| | |||| ||| |||| ||||||||||||||||||||||| | |
|
|
| T |
11749419 |
tgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttatt |
11749320 |
T |
|
| Q |
130 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
229 |
Q |
| |
|
|||||| | ||| |||||| |||||||| |||| |||| || |||||||||||| || |||| ||||| ||||| ||||| ||||||||||||| |
|
|
| T |
11749319 |
tgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatcatgttgatg |
11749220 |
T |
|
| Q |
230 |
ga |
231 |
Q |
| |
|
|| |
|
|
| T |
11749219 |
ga |
11749218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University