View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2452_low_2 (Length: 608)
Name: NF2452_low_2
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 35 - 590
Target Start/End: Complemental strand, 44621789 - 44621223
Alignment:
| Q |
35 |
attacgaataaaaaatgaatttgcttcaacataatttatctaggtaatttatctaaaatttgaaannnnnnnnnnnnnncgcataatttatcttcacttt |
134 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||| |
|
|
| T |
44621789 |
attatgaataaaaaatgaatttgcttcaacataatttatctaggtaatttatctataatttttaatttttaatttttttcgcataatttctcttcacttt |
44621690 |
T |
|
| Q |
135 |
aactaatcatatttgaattatttcatatttgacgagtgtctaacactagatgtgagtacatctcacaaccaaaatttaaactttgatttgccgtgttgtg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44621689 |
aactaatcatatttgaattatttcatatttgacgagtgtctaacactaaatgtgagtacatctcacaaccaaaatttaaactttgatttgccgtgttgtg |
44621590 |
T |
|
| Q |
235 |
ggagtttagcatttttgttagactcgacctcctattgt-----------aatttgtcaatcttactaatttgacccgtaatataaggattaccatcactt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
44621589 |
ggagtttagcatttttgttagactcgacctcctattgttgaaaagatgtaatttgtcaatcttactaatttgacctgtaatataaggatcaccgccactt |
44621490 |
T |
|
| Q |
324 |
atgtcgaagacttatctcatctaatatgtgacttgcaacatactcctcacattaatgatgctaaaacatgatctgaattatctgatagcatatgactcga |
423 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44621489 |
atgttgaagacttatctcatctagtatgtgacttacaacatactcctcacattaatgatgctaaaacatgatctgaattatctgatagcatatgacccga |
44621390 |
T |
|
| Q |
424 |
tacatcttaaatagactttgatgctatcttaaaacttacattcaggttttatttcatccaatctaatgtggatgaatggaatgttctaaaaccttgtctc |
523 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44621389 |
cacatcttaaatagactttgatactatcttaaaacttacattcaggttttatttcatccaatctaatgtggatgaatggaacgttctaaaaccttgtctc |
44621290 |
T |
|
| Q |
524 |
tacacaaataacattttagaaggcaaaccannnnnnngaaggttttgctaacatgttgccctgaaac |
590 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44621289 |
tacacaaatagcattttagaaggcaaaccatttttttgaaggttttgctaacatgttgccctgaaac |
44621223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University