View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_21 (Length: 236)
Name: NF2452_low_21
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 33319470 - 33319410
Alignment:
| Q |
9 |
aagcctttgaataaagtccatattagacgcctccaaaaaacaacaaataaatagtttatcg |
69 |
Q |
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| T |
33319470 |
aagcctttgaataaagtccatattagacgcctccaaaaaacaacaaataaatagtttatcg |
33319410 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 33319329 - 33319282
Alignment:
| Q |
150 |
ggggcaaattccattaacctcccctaaagttgtcttaaataacacaaa |
197 |
Q |
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| T |
33319329 |
ggggcaaattacattaacctcccctaaaattatcttaaataacacaaa |
33319282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 11768413 - 11768446
Alignment:
| Q |
164 |
taacctcccctaaagttgtcttaaataacacaaa |
197 |
Q |
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| T |
11768413 |
taacctcccctaaggttgtcttaaataacacaaa |
11768446 |
T |
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