View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_22 (Length: 235)
Name: NF2452_low_22
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 12693021 - 12693226
Alignment:
| Q |
19 |
gtttttaaagattttggaaacgaagcttcaattgttatttgtctttcatacagtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaa |
118 |
Q |
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| T |
12693021 |
gtttttaaagattttgaaaacgatgcttcaattgttatttgtctttcatacagtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaa |
12693120 |
T |
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| Q |
119 |
agaattcatttagttgtattttatactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaaccttt |
218 |
Q |
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| T |
12693121 |
agaattcatttagttgtattttatactaattttgatttcgatgttatagaaaggtctgctccacacaaactagtggtttaaagctagatgataaaccttt |
12693220 |
T |
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| Q |
219 |
gctact |
224 |
Q |
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| |||| |
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| T |
12693221 |
gttact |
12693226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 12689431 - 12689355
Alignment:
| Q |
141 |
atactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
217 |
Q |
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| T |
12689431 |
atactaattttgaattcaatgttataggaaggtgtgctccacacaacctagtggttaaaagctagatgataaacctt |
12689355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 12696164 - 12696067
Alignment:
| Q |
120 |
gaattcatttagttgtattttatactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
217 |
Q |
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| T |
12696164 |
gaattcatttagttggagtcaatactaattttgaaatcaatgttatagtaacgtgtgctccacacaacctagtggttgaaagctagacgataaacctt |
12696067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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