View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_24 (Length: 226)
Name: NF2452_low_24
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47582254 - 47582478
Alignment:
| Q |
1 |
tcatttaagggtaccatgcagggtagggatatccaaaattcaaaaataggtttgtcatgtaaaccattataaggttgttttataaagtgaattggtttta |
100 |
Q |
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| T |
47582254 |
tcatttaagggtaccatgcagggtagggatatccaaaattcaaaaataggtttgtcatgtaaaccattataaggttgttttttaaagtgaattggtttta |
47582353 |
T |
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| Q |
101 |
actccttttccttttctannnnnnnnaatcatatataaacaagagacttctatttaaataaaagtgtaaaaccttgtctttcgtaccctgttaatttttc |
200 |
Q |
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| T |
47582354 |
actccttttccttctat-ttttttttaatcatatataaagaagagacttctatttaaataaaagtgtaaaaccttgtctttcgtaccctaataatttttc |
47582452 |
T |
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| Q |
201 |
ttactatttttaaggttgaggtgtct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47582453 |
ttactatttttaaggttgaggtgtct |
47582478 |
T |
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