View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_26 (Length: 222)
Name: NF2452_low_26
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 40108483 - 40108676
Alignment:
| Q |
14 |
catagggaaaccaacatgatcacgacgaatgtttggaacgagatgtgaggtgccaaaaagaacaccatagcaatcgtagcactttgccatatcttcaact |
113 |
Q |
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| T |
40108483 |
catagggaaaccaacatgatcacgacgaatgtttggaacgagatgtgaggtgccaaaaagaacaccatagcaatcgtagcactttgccatatcttcaact |
40108582 |
T |
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| Q |
114 |
gtgcaaaagccccttcctacaccacaaagtaacataaacttcacataatagatagctcaatgcatatttgaaattactacgagtttgatgaaat |
207 |
Q |
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| T |
40108583 |
gtgcaaaagccccttcctacaccacaaagtaacataaacttcacataatagatagctcaatgcatatttgaaattactacgagtttgatgaaat |
40108676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 40153023 - 40153144
Alignment:
| Q |
46 |
ttggaacgagatgtgaggtgccaaaaagaacaccatagcaatcgtagcactttgccatatcttcaactgtgcaaaagccccttcctacaccacaaagtaa |
145 |
Q |
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| T |
40153023 |
ttggaacgaaatgtacggggccaaaaagaacaccatagcaatggtagcgctctgccatatctttagctgagcaaaagccccttcctgcaccgcaaagtaa |
40153122 |
T |
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| Q |
146 |
cataaacttcacataatagata |
167 |
Q |
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| T |
40153123 |
tataagtttgacataagagata |
40153144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 40146419 - 40146512
Alignment:
| Q |
46 |
ttggaacgagatgtgaggtgccaaaaagaacaccatagcaatcgtagcactttgccatatcttcaactgtgcaaaagccccttcctacaccaca |
139 |
Q |
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| T |
40146419 |
ttggaacgaaatgtacggggccaaaaagaacacgacagcaattgtagcgctttgccatatctttagctgtgcaaaagccccttcctgcaccaca |
40146512 |
T |
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