View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2452_low_5 (Length: 522)

Name: NF2452_low_5
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2452_low_5
NF2452_low_5
[»] chr1 (5 HSPs)
chr1 (169-384)||(14252788-14253003)
chr1 (18-81)||(14252637-14252700)
chr1 (284-349)||(3374755-3374820)
chr1 (284-353)||(9868963-9869032)
chr1 (407-448)||(10778145-10778186)
[»] chr4 (3 HSPs)
chr4 (449-512)||(37818752-37818815)
chr4 (410-447)||(37819004-37819041)
chr4 (407-448)||(53436863-53436904)
[»] chr7 (4 HSPs)
chr7 (407-448)||(15746945-15746986)
chr7 (407-448)||(7355908-7355949)
chr7 (406-448)||(34534977-34535019)
chr7 (402-448)||(47642096-47642142)
[»] chr6 (1 HSPs)
chr6 (407-448)||(1569325-1569366)
[»] chr3 (1 HSPs)
chr3 (406-448)||(20383819-20383861)
[»] chr8 (1 HSPs)
chr8 (407-448)||(35470319-35470360)
[»] chr5 (1 HSPs)
chr5 (407-448)||(38053983-38054024)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 169 - 384
Target Start/End: Original strand, 14252788 - 14253003
Alignment:
Q  169 catgtggatgttttggattatataattagaatcaatccagaatgttgaatatggcattaaaagcaatgtttgaatggttgatggtgtgcttaatacattt 268  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  14252788 catgtggatgttttggattatgtaattggaatcaatccagaatgttgaatatggcgttaaaagcaatgtttgaatggttgatggtgtgtttaatacattt 14252887  T
Q  269 taatcggtatggctcttttaaacgtttcttttgattgtagttacaatttatgaatgttctattgctataaatagtcttgcattcttcaaacaaaaaatat 368  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  14252888 taatcggtatggctcttttaaacatttcttttgattgtagttacaatttatgaacgttctgttgctataaatagtcttgcattcctcaaacaaaaaatat 14252987  T
Q  369 tcattctccacttttc 384  Q
    ||||||||||||||||    
T  14252988 tcattctccacttttc 14253003  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 14252637 - 14252700
Alignment:
Q  18 aatggatatatcaggtgaagatttaagtttgtctgattcatcttgtgtgtattttattatgttg 81  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14252637 aatggatatatcaagtgaagatttaactttgtctgattcatcttgtgtgtattttattatgttg 14252700  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 3374755 - 3374820
Alignment:
Q  284 ttttaaacgtttcttttgattgtagttacaatttatgaatgttctattgctataaatagtcttgca 349  Q
    ||||||| ||||| ||||||||||||||||||||  ||| ||| |||  |||||||||||||||||    
T  3374755 ttttaaaagtttcctttgattgtagttacaattttggaacgttttatgactataaatagtcttgca 3374820  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 9868963 - 9869032
Alignment:
Q  284 ttttaaacgtttcttttgattgtagttacaatttatgaatgttctattgctataaatagtcttgcattct 353  Q
    ||||||||||||| ||  |||||||||||| | || ||||||| ||  | ||||||||||||||||||||    
T  9868963 ttttaaacgtttccttcaattgtagttacattataggaatgttttaaggttataaatagtcttgcattct 9869032  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 10778145 - 10778186
Alignment:
Q  407 cagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  10778145 cagtggcggatcttaatagagacccatgggtgccatggcatc 10778186  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 512
Target Start/End: Complemental strand, 37818815 - 37818752
Alignment:
Q  449 ggattcaaacctgcacctgcttggtattatcaaacaattttatccactaggccaggtgatgatg 512  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||    
T  37818815 ggattcaaacctgcacccgcttggtattatcaaacaattttatccagtaggttaggtgatgatg 37818752  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 37819041 - 37819004
Alignment:
Q  410 tggcggatcttagtgaagacccatgggtgccatggcat 447  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  37819041 tggcggatcttagtgaagatccatgggtgccatggcat 37819004  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 53436904 - 53436863
Alignment:
Q  407 cagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  53436904 cagtggcggatcttagtacagacccatgggtgccatggcatc 53436863  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 15746986 - 15746945
Alignment:
Q  407 cagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15746986 cagtggcggatcttagtgaagacccatgggtgccatggcatc 15746945  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 7355908 - 7355949
Alignment:
Q  407 cagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  7355908 cagtggcggatcttagtacagacccatgggtgccatggcatc 7355949  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 448
Target Start/End: Original strand, 34534977 - 34535019
Alignment:
Q  406 gcagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    ||||||||||||||||||  |||||||| ||||||||||||||    
T  34534977 gcagtggcggatcttagtacagacccataggtgccatggcatc 34535019  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 47642142 - 47642096
Alignment:
Q  402 gtgggcagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    |||| ||||||||||||||||   |||||||||||||||||||||||    
T  47642142 gtggacagtggcggatcttaggagagacccatgggtgccatggcatc 47642096  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 1569325 - 1569366
Alignment:
Q  407 cagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1569325 cagtggcggatcttagtgaagacccatgggtgccatggcatc 1569366  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 448
Target Start/End: Complemental strand, 20383861 - 20383819
Alignment:
Q  406 gcagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  20383861 gcagtggcggatcttagtacagatccatgggtgccatggcatc 20383819  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 35470319 - 35470360
Alignment:
Q  407 cagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  35470319 cagtgacggatcttagtagagacccatgggtgccatggcatc 35470360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 38053983 - 38054024
Alignment:
Q  407 cagtggcggatcttagtgaagacccatgggtgccatggcatc 448  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  38053983 cagtggcggatcttaatagagacccatgggtgccatggcatc 38054024  T

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