View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2452_low_7 (Length: 471)
Name: NF2452_low_7
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_7 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 6943230 - 6943698
Alignment:
| Q |
17 |
caaaacctgcttctgcacgttgttcatattcgtcactttgcttttcttctccaggttcgttcttgattctgttttccatactgcttattcattcttacct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6943230 |
caaaacctgcttctgcacgttgttcatattcgtcactttgcttttcttctccaggttcgttcttgattctgttttccatactgcttattcattcttacgt |
6943329 |
T |
|
| Q |
117 |
tttgaattgttaattgaatctt--------------gcactgtgatgtttcattgattatagtttcnnnnnnngtgcttataggtttcttgattacaact |
202 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6943330 |
tttgaattgttaattgaatcttctatgttgaatcttgcactgtgatgtttcattgattatagtttctttttttgtgcttataggtttcttgattacaact |
6943429 |
T |
|
| Q |
203 |
tacttgttttcatcaaaaccctaacaatgaaaaaattgtgcatagaagacatatcagagatggtaaatttagggttagatttagagacggagattttggc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6943430 |
tacttgttttcatcaaaaccctaacaatgaaaaaattgtgcatacaagacatatcggagatggtgaatttagggttagatttagagacggagattttggc |
6943529 |
T |
|
| Q |
303 |
gtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttcagagccctccctttctgaaacggcggcacatgaat |
402 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6943530 |
gtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatcttggaatgttcttgttcagagccctgcctttctgaaacggcggcacatgaat |
6943629 |
T |
|
| Q |
403 |
atgcatgatagtcctagtctcatgatccttaatgaaaaacaaaattatgtaacccttctctcatgtgac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6943630 |
atgcatgatagtcctagtctcatgatccttaataaaaaacaaaattatgtaacccttctctcatgtgac |
6943698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 233 - 468
Target Start/End: Complemental strand, 7488583 - 7488348
Alignment:
| Q |
233 |
aaaaattgtgcatagaagacatatcagagatggtaaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgttt |
332 |
Q |
| |
|
|||||||| || |||||| |||||||||| | | |||||||| ||||||||||||| |||||||||| |||||| || ||||| ||||||||| |||| |
|
|
| T |
7488583 |
aaaaattgagcttagaagggatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttt |
7488484 |
T |
|
| Q |
333 |
cagatgtgttcaacgatcttggaatgttcttgttcagagccctccctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatcctt |
432 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||| ||| ||||||||||| || ||||||| || ||| ||||||||||| ||||||||||||| |
|
|
| T |
7488483 |
tagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatcctt |
7488384 |
T |
|
| Q |
433 |
aatgaaaaacaaaattatgtaacccttctctcatgt |
468 |
Q |
| |
|
|||||| | || |||||||| |||||||||||| |
|
|
| T |
7488383 |
catgaaacaaaaccctatgtaactcttctctcatgt |
7488348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 387
Target Start/End: Original strand, 7873147 - 7873256
Alignment:
| Q |
278 |
tagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttcagagccctcc |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| || | |||||||||||||| ||||| ||||||||| |||| |||||||||| |||| |||||| ||| | |
|
|
| T |
7873147 |
tagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaacctac |
7873246 |
T |
|
| Q |
378 |
ctttctgaaa |
387 |
Q |
| |
|
|||| ||||| |
|
|
| T |
7873247 |
ctttatgaaa |
7873256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 7475674 - 7475565
Alignment:
| Q |
278 |
tagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttcagagccctcc |
377 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||| |||||||||||||| | || ||| ||||||||| |||||||||| |||| |||||| ||| | |
|
|
| T |
7475674 |
tagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttcttggaatgatcttattcagacccccac |
7475575 |
T |
|
| Q |
378 |
ctttctgaaa |
387 |
Q |
| |
|
|||||||||| |
|
|
| T |
7475574 |
ctttctgaaa |
7475565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University