View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2452_low_8 (Length: 456)
Name: NF2452_low_8
Description: NF2452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2452_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 42805231 - 42804853
Alignment:
| Q |
11 |
acatcatcaaacttctagtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggcggttgacatacacaacatttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42805231 |
acatcatcaaacttctagtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggtggttgacatacacaacatttt |
42805132 |
T |
|
| Q |
111 |
caatgtaaattgcaaaaagctcttaatatcctgtggtccaagaaatactgaaaaattataaacatatgcgttgtgaataaatagtgctattcatgacagg |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42805131 |
caatgtaaattgcaaaaagctcttgatatcctgtggtccaagaaatactgaaaaattataaacaaatgcgttgtgaataaatagtgctattcatgacagg |
42805032 |
T |
|
| Q |
211 |
gcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42805031 |
gcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagaagaaagcataacttaacttc |
42804932 |
T |
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| Q |
311 |
aatgagaatggatcctctcatgttctttcatgttaaaattatatgcgacagttagtgaaaaacggcaataaacttatat |
389 |
Q |
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| T |
42804931 |
aatgagaatagatcctctcatgttctttcatgttgaaattatatgcgacagttagtgaaaaatggcaataaacttatat |
42804853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 42762821 - 42762451
Alignment:
| Q |
11 |
acatcatcaaacttctagtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggcggttgacatacacaacatttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
42762821 |
acatcatcaaacttctagtagatgtattaaaaatataa--------taaatggtaagggcatcaacacaaatccttggcagttgacatacacagcatttt |
42762730 |
T |
|
| Q |
111 |
caatgtaaattgcaaaaagctcttaatatcctgtggtccaagaaatactgaaaaattataaacatatgcgttgtgaataaatagtgctattcatgacagg |
210 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
42762729 |
cattgtaaattgcaaaaagctcttaatatcctgtggtccaagaaatactgaaaaattataaacaaatacgttgtgaataaatagtgctattcatgacagg |
42762630 |
T |
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| Q |
211 |
gcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttc |
310 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||| |
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| T |
42762629 |
gcatcttatgaaggcgggataggttcaacccctaaaaacgacataaatgaaattaaaacttcaatccaaagtaacatagaagaaagcataaattcacttc |
42762530 |
T |
|
| Q |
311 |
aatgagaatggatcctctcatgttctttcatgttaaaattatatgcgacagttagtgaaaaacggcaataaacttatat |
389 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
42762529 |
aatgagaatggatcctctcatgctctttcatgttaaaattatatgtgacagttagtgaaaaacggcaataaacttatat |
42762451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 440
Target Start/End: Complemental strand, 42761156 - 42761122
Alignment:
| Q |
406 |
agcatcaccaatctccccgcatttaccatacatat |
440 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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| T |
42761156 |
agcatcaccaatctcaccgcatttaccatacatat |
42761122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 198 - 385
Target Start/End: Complemental strand, 33048988 - 33048811
Alignment:
| Q |
198 |
tattcatgacagggcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagatgaaagc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
33048988 |
tattcatgacagggcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatcctaagtaacatagaagaaagc |
33048889 |
T |
|
| Q |
298 |
ataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatatgcgacagttagtgaaaaacggcaataaactt |
385 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048888 |
ataacttaacttcaatgagaatggatcctctca----------tgttaaaattatatgcgacagttagtgaaaaacggcaataaactt |
33048811 |
T |
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