View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2454_low_1 (Length: 243)
Name: NF2454_low_1
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49192511 - 49192286
Alignment:
| Q |
1 |
catgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49192511 |
catgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagttta |
49192412 |
T |
|
| Q |
101 |
aacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49192411 |
aacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatga |
49192312 |
T |
|
| Q |
201 |
gtatttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49192311 |
gtatttctcatatttgggtcaaaaga |
49192286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 49188772 - 49188550
Alignment:
| Q |
4 |
gttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaac |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||| ||||||||| |
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|
| T |
49188772 |
gttaatgaactcgttcaaggaatcatcgaaggggagacacgtgtcctcgctgcttccatgaccatggaggaggttttcagaggaacgaaacagtttaaac |
49188673 |
T |
|
| Q |
104 |
aagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatgagta |
203 |
Q |
| |
|
|||||||||||| ||||||||||| || | || |||||||| ||||||||||||||||| |||||||| || || || |||||||| ||||||||||| |
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|
| T |
49188672 |
aagaagtatttgacaaagttcaacttgagttgaatcaattcggattattgatttacaatgcgaatgttaagcaattggtggatgtgcccggtcatgagta |
49188573 |
T |
|
| Q |
204 |
tttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49188572 |
tttctcatatttgggtcaaaaga |
49188550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 49208785 - 49208563
Alignment:
| Q |
4 |
gttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaac |
103 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
49208785 |
gttaatgaacttgttcaaggaatcatcgaaggcgagacacgtgtcctcgttgcttcaatgacgatggaagaggttttcagaggaacaaaagaatttaaac |
49208686 |
T |
|
| Q |
104 |
aagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatgagta |
203 |
Q |
| |
|
|||||||||| | ||||||||||| ||| | ||||||||||| |||| ||||||||| || |||||||| || || || |||||||| |||||||| || |
|
|
| T |
49208685 |
aagaagtattcgacaaagttcaacttgaattgaaccaattcggattatggatttacaacgccaatgttaagcaattggtggatgtgccgggtcatgaata |
49208586 |
T |
|
| Q |
204 |
tttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
49208585 |
tttctcatatttgggacaaaaga |
49208563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49213628 - 49213403
Alignment:
| Q |
1 |
catgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagttta |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
49213628 |
catgttaatgaacttgttcaaggaatcattgaaggtgagacacgtgtcctagctgcctccatgactatggaggaggttttcagaggaacaaaacagttta |
49213529 |
T |
|
| Q |
101 |
aacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| || | || |||||||| ||||||||||| ||||| |||||||| || || || |||||||| ||||| || |
|
|
| T |
49213528 |
aacaagaagtatttgataaagttcaacttgagttgaatcaattcgggttattgatttataatgcgaatgttaagcaattggtggatgtgcctggtcacga |
49213429 |
T |
|
| Q |
201 |
gtatttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
||||||||||||| |||| ||||||| |
|
|
| T |
49213428 |
gtatttctcatatctgggacaaaaga |
49213403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49203612 - 49203388
Alignment:
| Q |
1 |
catgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagttta |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| || |||||||| || ||||| || ||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
49203612 |
catgttaatgaacttgttcaaggaatcattgaaggggaaacacgtgtactggctgcttccatgaccatggaggaggttttcagaggaacgaaacagttta |
49203513 |
T |
|
| Q |
101 |
aacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatga |
200 |
Q |
| |
|
|||||||| |||| | ||||||||||| || | || |||||||| ||||||||||||||||| |||||||| || || || |||||||| |||||||| |
|
|
| T |
49203512 |
aacaagaa-tattcgacaaagttcaacttgagttgaatcaattcggattattgatttacaatgcaaatgttaagcaattggtggatgtgcctggtcatga |
49203414 |
T |
|
| Q |
201 |
gtatttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
||||||||||||| |||| ||||||| |
|
|
| T |
49203413 |
gtatttctcatatctggggcaaaaga |
49203388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 29622909 - 29623084
Alignment:
| Q |
10 |
gaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaag |
109 |
Q |
| |
|
||||| ||||| |||| ||||||||| ||||||| ||||||||| || || ||||| |||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
29622909 |
gaacttgttcagggaaacatcgaaggtgagacacatgtcctcgcagcttccatgactatggaagaggtttttagaggaacagaagagtttaaacaagaag |
29623008 |
T |
|
| Q |
110 |
tatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttga |
185 |
Q |
| |
|
|||| |||||||||| | |||| || ||||||| |||||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
29623009 |
tattcaagaaagttcaacacaaactgaatcaattcgagttattgatttacaatgtgaatgtcaaacaattggttga |
29623084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32592038 - 32592263
Alignment:
| Q |
1 |
catgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagttta |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32592038 |
catgtcaaggaactcgttcaaggaatcattgaaggggagacacgtgtcctcgctgcttcgatgaccatggaagaggttttcagaggaacaaaagagttta |
32592137 |
T |
|
| Q |
101 |
aacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatga |
200 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || || |||||||| |||||||| |
|
|
| T |
32592138 |
aacaagaagtattcgagaaagttcaactcgaactaaaccaattcgggttattgatttacaatgcgaatgttaagcaattggtggatgtgcctggtcatga |
32592237 |
T |
|
| Q |
201 |
gtatttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
|||||||| ||||| || ||||||| |
|
|
| T |
32592238 |
atatttctcctatttagggcaaaaga |
32592263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 31527890 - 31527668
Alignment:
| Q |
4 |
gttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaac |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31527890 |
gttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagaagttttcagaggaacaaaagagtttaaac |
31527791 |
T |
|
| Q |
104 |
aagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatgagta |
203 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || || || |||||||| |||||||| || |
|
|
| T |
31527790 |
aagaaatattcaagaaagttcaactcgaactaaaccaatttgggttattgatttacaatgcgaatgttaagcaattggtggatgtgcctggtcatgaata |
31527691 |
T |
|
| Q |
204 |
tttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
|||||| ||||| || ||||||| |
|
|
| T |
31527690 |
tttctcctatttagggcaaaaga |
31527668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37031286 - 37031061
Alignment:
| Q |
1 |
catgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagttta |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
37031286 |
catgttaatgaacttgttcaaggaatcatcgaaggggagacacgtgtcctcgctgcttccatgacgatggaggaggttttcagaggaacaaaacagttta |
37031187 |
T |
|
| Q |
101 |
aacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatga |
200 |
Q |
| |
|
||||||||||||| | ||||||||||| || | || |||||||| ||||||||||||||||| |||||||| || || || ||||||| |||||||| |
|
|
| T |
37031186 |
aacaagaagtattcgacaaagttcaacttgagttgaatcaattcggattattgatttacaatgcgaatgttaagcaattggtggatgtgcgcggtcatga |
37031087 |
T |
|
| Q |
201 |
gtatttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37031086 |
gtatttctcatatttgggtcaaaaga |
37031061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 51825290 - 51825071
Alignment:
| Q |
7 |
aaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaag |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51825290 |
aaggaactcgttcaaggaatcattgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagaggttttcaaaggaacaaaagagtttaaacaag |
51825191 |
T |
|
| Q |
107 |
aagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatgagtattt |
206 |
Q |
| |
|
||||||| | |||||||||||||| | || |||||||| ||||||||||||||||| |||||||| || || || || ||||| || ||||| ||||| |
|
|
| T |
51825190 |
aagtattcgagaaagttcaactcgagttgaatcaattcggattattgatttacaatgcgaatgttaagcaattggtggacgtgcctgggcatgaatattt |
51825091 |
T |
|
| Q |
207 |
ctcatatttgggtcaaaaga |
226 |
Q |
| |
|
||||||||| || ||||||| |
|
|
| T |
51825090 |
ctcatatttagggcaaaaga |
51825071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 26757151 - 26756929
Alignment:
| Q |
4 |
gttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaac |
103 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| | |
|
|
| T |
26757151 |
gttaatgaacttgttcaaggaatcatcgaaagcgagacacgtgtcctcgctgcttccatgactatggaagaggtcttcagaggaacaaaagagtttataa |
26757052 |
T |
|
| Q |
104 |
aagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgctaatgttaaacagttagttgatgtgccaggtcatgagta |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||| || | ||||| |||||||||||||||| |||||||| || || || ||||| |||||||| ||||| |
|
|
| T |
26757051 |
aagaagtattcaagaaagttcaactcgaactgaattagttcgggttattgatttacaatgtgaatgttaagcaattggtagatgttccaggtcacgagta |
26756952 |
T |
|
| Q |
204 |
tttctcatatttgggtcaaaaga |
226 |
Q |
| |
|
|||||| || || || ||||||| |
|
|
| T |
26756951 |
tttctcttacttagggcaaaaga |
26756929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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