View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2454_low_11 (Length: 292)
Name: NF2454_low_11
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 33443310 - 33443132
Alignment:
| Q |
64 |
catcatcaatgattttagggtaattgttctaaagagtatatgttgagtaattgtgcaataaggtctacatggttgtgagtttactaacaatcatgatttg |
163 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33443310 |
catcaccaatgattttagggtaattgttctaaagagtatatgttgagtaattgtgcaataaggtctacatggttgtgagtttactcacaatcatgatttg |
33443211 |
T |
|
| Q |
164 |
gaccttgctattttatttatgctagttaaataaatcatgtattcaaaattgattgcttgcttactagtatatattgttc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
33443210 |
gaccttgctattttatttatgctagttaaataaatcatgtattcaaaattgcttgcttgcttactagtatattttgttc |
33443132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 8554129 - 8554087
Alignment:
| Q |
200 |
atgtattcaaaattgattgcttgcttactagtatatattgttc |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8554129 |
atgtgttcaaaattgattgcttgcttactagtatattttgttc |
8554087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 8578533 - 8578579
Alignment:
| Q |
196 |
aatcatgtattcaaaattgattgcttgcttactagtatatattgttc |
242 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | ||| |||||| |
|
|
| T |
8578533 |
aatcatgtgttcaaaattgattgcttgcttactactctattttgttc |
8578579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University