View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_12 (Length: 278)
Name: NF2454_low_12
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 8340649 - 8340538
Alignment:
| Q |
167 |
agtctcctaaaatttgttcatgtttaaaacggtctataatgtgtgtgtagtattcgtttcaatccttatccttatgtagccatattgaaatggtctaata |
266 |
Q |
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| T |
8340649 |
agtctcctaaaatttgttcatgtttaaaacggtctataatgtgtgtggagtattcatttcaatccttatccttatgtagccatattgaaatggtctaata |
8340550 |
T |
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| Q |
267 |
taaaatcaaatg |
278 |
Q |
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| T |
8340549 |
taaaatcaaatg |
8340538 |
T |
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Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 37973414 - 37973317
Alignment:
| Q |
7 |
gagagatgaatacactaacatgaaaaacatgcatgtatatagagttgttggctagggatggcaatttttccatgtgcaacactcctatttgaatcaca |
104 |
Q |
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| T |
37973414 |
gagagaagaatacactaacatgaaaaacatgcatgtatatagagttgttggctagggatggcaatttttccatgtgcaacactcctatttgaatcaca |
37973317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 8340717 - 8340681
Alignment:
| Q |
99 |
atcacaattcagaaaccaaacaaatcaaatgtactag |
135 |
Q |
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| T |
8340717 |
atcacaattcagaaaccaaacaaatcaaatatactag |
8340681 |
T |
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