View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_13 (Length: 257)
Name: NF2454_low_13
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 6855057 - 6855242
Alignment:
| Q |
63 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
162 |
Q |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
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| Q |
163 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgg |
248 |
Q |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgg |
6855242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 6823210 - 6823024
Alignment:
| Q |
8 |
atcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaa |
107 |
Q |
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| T |
6823210 |
atcactcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaattcatcccttcaaagcttgtttttcctttctctttcggatcttcagaa |
6823113 |
T |
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| Q |
108 |
cattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcgaacagcaccaccagataaaacaccaccatatgca |
196 |
Q |
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| T |
6823112 |
cattcttgactatctttttctcttcaaccaagaaagctcgaatgattctttctctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 24245826 - 24245690
Alignment:
| Q |
8 |
atcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaa |
107 |
Q |
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| T |
24245826 |
atcactcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaagcttgcttttcctttgtcttttggatcttcaaga |
24245727 |
T |
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| Q |
108 |
cattcttgactatcttttgcttttcaaccaagaaagc |
144 |
Q |
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| T |
24245726 |
ctttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 24245067 - 24244974
Alignment:
| Q |
155 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgg |
248 |
Q |
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| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactcagtgg |
24244974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
74 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
144 |
Q |
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||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| | |||||| |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
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