View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_14 (Length: 256)
Name: NF2454_low_14
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 6855059 - 6854848
Alignment:
| Q |
16 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
115 |
Q |
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| T |
6855059 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
6854960 |
T |
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| Q |
116 |
gtatttcctaatgcgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaagctt |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854959 |
gtatttcctaatgtgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaagctt |
6854860 |
T |
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| Q |
216 |
cctaacatctac |
227 |
Q |
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|||||||||||| |
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| T |
6854859 |
cctaacatctac |
6854848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 6823194 - 6823258
Alignment:
| Q |
2 |
ttttaggtttgagtgat-atagtacaagcacaaaattcattagagttgtttcctttgttaatttt |
65 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
6823194 |
ttttaggtttgagtgattatagtacaagcacaaaatttattagagttgttccctttgtgaatttt |
6823258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24245809 - 24245859
Alignment:
| Q |
1 |
gttttaggtttgagtgat-atagtacaagcacaaaattcattagagttgtt |
50 |
Q |
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|||||||||||||||||| |||||| |||||||||||| ||||||| |||| |
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| T |
24245809 |
gttttaggtttgagtgattatagtaaaagcacaaaatttattagagctgtt |
24245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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