View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_15 (Length: 251)
Name: NF2454_low_15
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_15 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 12880018 - 12880227
Alignment:
| Q |
30 |
attttattatcttgtaaacaattgaatatcttcaatactatttgatgcggcaaacatttaaacataaagatcaacttatgaaatttttgtcgaaattttt |
129 |
Q |
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| T |
12880018 |
attttattatcttgtaaactattgaatatcttcaatactatttgatgcggcaaacatttaaacataaagatcaacttgtgaaa------------ttttt |
12880105 |
T |
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| Q |
130 |
ctctctgatattactattagaatcttcatgaaaatcatgaaatgaggtattttctgaccctttactttggactaagttcgatctatcttgaactagctca |
229 |
Q |
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| T |
12880106 |
ctctctgatattactattagaatcttcatgaaaatcatgaaatgaggtattttctgaccctttactttggactaagttcgatctatcttgaactagctca |
12880205 |
T |
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| Q |
230 |
aatgattttaaagtacagaggt |
251 |
Q |
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| T |
12880206 |
aatgattttaaagtacagaggt |
12880227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 11798442 - 11798222
Alignment:
| Q |
30 |
attttattatcttgtaaacaattgaatatcttcaatactatttgatgcggcaaacatttaaacataaagatcaacttatgaaatttttgtcgaaattttt |
129 |
Q |
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| T |
11798442 |
attttattatcttgtaaacgattaaatgtcttaaatactatttgatgcatcaaatatttaaacataaagatcatcttgtgaaaactttatcgattttttt |
11798343 |
T |
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| Q |
130 |
ctctctgatattactattagaatcttcatgaaaatcatgaaatgaggtattttctgaccctttactttggactaagttcgatctatcttgaactagctca |
229 |
Q |
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| T |
11798342 |
ttctttgatattactattgaaatcttcatgaaaatcatggaatgagattttttgtgactctttactttgggctaagttccatctatatcgaattaggtca |
11798243 |
T |
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| Q |
230 |
aatgattttaaagtacagagg |
250 |
Q |
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| T |
11798242 |
aatgattttaaagtatagagg |
11798222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 12872683 - 12872758
Alignment:
| Q |
31 |
ttttattatcttgtaaacaattgaatatcttcaatactatttgatgcggcaaacatttaaacataaagatcaactt |
106 |
Q |
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| T |
12872683 |
ttttattatcttatacattattaaatgtcttaaatattatttgatgcggcacacatttaaacgtaaagatcaactt |
12872758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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