View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_16 (Length: 250)
Name: NF2454_low_16
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12880205 - 12880443
Alignment:
| Q |
1 |
aaatgattttaaagtacagaggttttgaaggattatacaaattctataagtaatttattaaccaaattcttgaagtatgatgtaattagtttgacaatta |
100 |
Q |
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| T |
12880205 |
aaatgattttaaagtacagaggttttgaaggattatacaaattctataagtaatttattaaccaaattcttgaagtatgatgtaattagtttgacaatta |
12880304 |
T |
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| Q |
101 |
taatgcaagttgcttagatttaagtttctaattttcagatatgcacctctaatcactgatgttcctaaaagttatcatttttaatttatccttctagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12880305 |
taatgcaagttgcttagatttaagtttctaattttcagatatgcacctctaatctctggtgttcctaaaagttatcatttttaatttatccttctagaaa |
12880404 |
T |
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| Q |
201 |
acttatatgttagttagagctatgatcatatttgttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
12880405 |
acttatatgttagttagagctatgatcatatttgttcat |
12880443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 11798243 - 11798121
Alignment:
| Q |
1 |
aaatgattttaaagtacagaggttttgaaggattatacaaattctataagtaatttattaaccaaattcttgaagtatgatgtaattagtttgacaatta |
100 |
Q |
| |
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|||||||||||||||| ||||| || |||||||| ||||||||||| |||| |||| ||||||| | ||||||| | |||||||||||| ||||| |
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| T |
11798243 |
aaatgattttaaagtatagaggctt-gaaggattttacaaattctagaagtggaatattgaccaaata-tgaaagtatgctctaattagtttgataatta |
11798146 |
T |
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| Q |
101 |
taatgcaagttgcttagatttaagt |
125 |
Q |
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||||||||||||||||||||||||| |
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| T |
11798145 |
taatgcaagttgcttagatttaagt |
11798121 |
T |
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