View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_2_N (Length: 538)
Name: NF2454_low_2_N
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_2_N |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 30 - 538
Target Start/End: Original strand, 42748743 - 42749253
Alignment:
| Q |
30 |
atttcgaacataaagccagtgttttgtgcgaaccattgtatgtccccttcatttcccatgtagacaaagattggagctttctttttggcaccaccccatt |
129 |
Q |
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| T |
42748743 |
atttcgaacataaagccagtgttttgtgcgaaccattgtatgtccccttcatttcccatgtagacaaagattggagctttctttttggcaccaccccaat |
42748842 |
T |
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| Q |
130 |
aggtatcattgatgagatacctttgttgaaatgtttgataactctgtggattataattgaaatgatcaagtatttgggtgaaaaactttgttctgtaaag |
229 |
Q |
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| T |
42748843 |
aggtatcattgataagatacctttgttgaaatgtttgataactctgtggattataattgaaatgatcaagtatttgggtgaaaaactttgttctgtaaag |
42748942 |
T |
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| Q |
230 |
gccattttgagcagaaatagaacgttgctgtaactctggactaactgctgaagaaggcaatttgggtataacatgggcacaagtgaaagtaaagtacatt |
329 |
Q |
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| T |
42748943 |
gccattttgagcagaaatagaacgttgctgtaactctggactaactgctgaagaaggcaatttgggtataacatgggcacaagtgaaagtaaagtacatt |
42749042 |
T |
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| Q |
330 |
ggaaaaaataaagaaaatagtataattatgaactggaatacaattgccattatttctatgattttgtggggtttatcaaatttgaatttgattgaactca |
429 |
Q |
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| T |
42749043 |
agaaaaaataaagaaaatagtataattatgaactggaatacaattgccattatttctatgattttgtggggtttatcaaatttgaatttgattgaactca |
42749142 |
T |
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| Q |
430 |
aaacaaggtact--ctcggttcacatctcaatccaaagttacacaatatacatcatgcacacaagaaaaaagaacggatactacgaggtgttagactttt |
527 |
Q |
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| T |
42749143 |
aaacaaggtactaactcggttcacatcttaatccaaagatacacaatatacatcatgcacacaagaaaaaagaacggatactacgaggtgttagactatt |
42749242 |
T |
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| Q |
528 |
gtcttgtttac |
538 |
Q |
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| T |
42749243 |
gtcttgtttac |
42749253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 42744025 - 42744227
Alignment:
| Q |
36 |
aacataaagccagtgttttgtgcgaaccattgtatgtccccttcatttcccatgtagacaaagattggagctttctttttggcaccaccccattaggtat |
135 |
Q |
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| T |
42744025 |
aacataaagccagtgttttgtgtaaaccactctatgttcccttcatttccagtatagacaaagattggagctttctttttggcaccaccccaataagtat |
42744124 |
T |
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| Q |
136 |
cattgatgagatacctttgttgaaatgtttgataactctgtggattataattgaaatgatcaagtatttgggtgaaaaactttgttctgtaaaggccatt |
235 |
Q |
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| T |
42744125 |
cattgatgagatacctttgttgaaatttctgataactctgagggttataattgaagtgatcaagtatttgagtgaaaaactttgttctgtaaagaccatt |
42744224 |
T |
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| Q |
236 |
ttg |
238 |
Q |
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||| |
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| T |
42744225 |
ttg |
42744227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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