View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_3_N (Length: 467)
Name: NF2454_low_3_N
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_3_N |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 26 - 454
Target Start/End: Complemental strand, 4760194 - 4759766
Alignment:
| Q |
26 |
caaaaacaacagacacttcacaaaaccaacatgtcaaatacttcatcgtcttcttctatttgggtactctctgacataaagcttcaattctttactcgta |
125 |
Q |
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| T |
4760194 |
caaaaacaacaaacacttcacaaaaccaacatgtcaaatacttcatcgtcttcttctatttgggtactctctaacataaagcttcaattctttactcgta |
4760095 |
T |
|
| Q |
126 |
tcaaacggtttcttcaatccaaagcaacccgaaagcgctgtgaatcctccgattatttaaacaaagaaaaaagcagagctgaacagagcaacattgaaca |
225 |
Q |
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| T |
4760094 |
tcaaacggtttcttcaatccaaagcaacccgaaagcgctgtgaatcctccgattatttaaacaaagaaaaaagcagagctgaacagagcaacattgaaca |
4759995 |
T |
|
| Q |
226 |
gaacatggttgaaaatattgaaacagtgcaagttatagagaagcataaggaggaggaggaggtggtggaagaaactgaaattttgctgcaaaagacagtg |
325 |
Q |
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| T |
4759994 |
gaacatggttgaaaatattgaaacagtgcaagttatagagaagcataaggaggaggaggaggtggtggaagaaactgaaattttgctgcaaaagacagtg |
4759895 |
T |
|
| Q |
326 |
aagatgcttcactttggaagctgggaagagaaggagatagctgcaaaagagattgaaagtttagttaaagaagatgttaaggttagaaagttgataacag |
425 |
Q |
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| T |
4759894 |
aagatgcttcactttggaagctgggaagagaaggagatagctgcaaaagagattgaaagtttagttaaagaagatgttaaggttagaaagttgataacag |
4759795 |
T |
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| Q |
426 |
aacttggagtggtgccggttttggtatct |
454 |
Q |
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| T |
4759794 |
aacttggagtggtgccggttttggtatct |
4759766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 452
Target Start/End: Complemental strand, 26982283 - 26982154
Alignment:
| Q |
323 |
gtgaagatgcttcactttggaagctgggaagagaaggagatagctgcaaaagagattgaaagtttagttaaagaagatgttaaggttagaaagttgataa |
422 |
Q |
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||||||| |||||||||||| |||||||||||||| ||| ||| |||||||| ||||| | | | |||| ||||||||||||| ||||||||||| | |
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| T |
26982283 |
gtgaagaagcttcactttgggagctgggaagagaaagaggaagcagcaaaagatattgagatgctggctaaacaagatgttaaggtcagaaagttgatga |
26982184 |
T |
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| Q |
423 |
cagaacttggagtggtgccggttttggtat |
452 |
Q |
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| T |
26982183 |
ctgaacttcgggtggtgcctgtattggtat |
26982154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 26999135 - 26999187
Alignment:
| Q |
323 |
gtgaagatgcttcactttggaagctgggaagagaaggagatagctgcaaaaga |
375 |
Q |
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| T |
26999135 |
gtgaagaagcttcactttgggagctgggaagagaaagaggaagcagcaaaaga |
26999187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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