View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_4 (Length: 426)
Name: NF2454_low_4
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 9431806 - 9432018
Alignment:
| Q |
146 |
aaataaatggatcaaaatcaagacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattttcaacagcagctc |
245 |
Q |
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| T |
9431806 |
aaataaatggatcaaaatcacgacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattttcaacagcagctc |
9431905 |
T |
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| Q |
246 |
aatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaattttacattttagtttcatctggttatctgaat |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431906 |
aatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaattttacattttagtttcatctggttatctgaat |
9432005 |
T |
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| Q |
346 |
ctataatcctatg |
358 |
Q |
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| T |
9432006 |
ctataatcctatg |
9432018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 114 - 358
Target Start/End: Original strand, 9452764 - 9453005
Alignment:
| Q |
114 |
gaacttaaggtctaaaagaaacacattttccaaaataaatggatcaaaatcaagacacgatttctccaaatcgcaccatgaattttgacgaaccttcaac |
213 |
Q |
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| T |
9452764 |
gaacttaaggtctaaaataa-cacattttccaaaataaatggatcaaaatcacgacacaatttcttcaaatcgcatcaagatttttgacgaaccttcaac |
9452862 |
T |
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| Q |
214 |
atcaattttgagtaaattttcaacagcagctcaatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaat |
313 |
Q |
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| T |
9452863 |
atcaattt-gagtaacttttcaacagcagctcaatgagtatgaaaatgctaagttaacaaagcaataattctaggaattttctcaacaattttcattaat |
9452961 |
T |
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| Q |
314 |
tttacattttagtttcatctggttatctgaatctataatcctatg |
358 |
Q |
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| T |
9452962 |
tttacatgtt-gtttgatatggttatctgaatgtataatcctatg |
9453005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 5611675 - 5611728
Alignment:
| Q |
179 |
ccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattt |
232 |
Q |
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| T |
5611675 |
ccaaatcataccacgatttttgacgaagcttcaacatcaattttgagtcaattt |
5611728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 21156962 - 21157015
Alignment:
| Q |
179 |
ccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattt |
232 |
Q |
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||||||| |||| || |||||||||| |||||||||||||||||||| ||||| |
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| T |
21156962 |
ccaaatcataccacgatttttgacgaagcttcaacatcaattttgagtcaattt |
21157015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 28074030 - 28073998
Alignment:
| Q |
207 |
cttcaacatcaattttgagtaaattttcaacag |
239 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
28074030 |
cttcaacatcaattttgagtcaattttcaacag |
28073998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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