View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_6 (Length: 345)
Name: NF2454_low_6
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 104 - 345
Target Start/End: Original strand, 1476463 - 1476704
Alignment:
| Q |
104 |
gatatgatagtcacaaagtccaaatacaaacaatagcaattgcaacatatagaacaaataacattaaaaataagagtgtttaaattgacttatctgggca |
203 |
Q |
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| T |
1476463 |
gatatgatagtcacaaagtccaaatacaaacaatagcaattgcaacatatagaacaaataacattaaaaataagagtgtttaaattgacttatctaagca |
1476562 |
T |
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| Q |
204 |
tatttattgcataaacacttatgatactatttagacaactcgtggaaacaatttataacatgatcataaattgttttcagttattaaataactaacatta |
303 |
Q |
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| T |
1476563 |
tatttattgcataaacacttatgatactatttagacaactcgtggaaacaatttatgacatgatcataaattgtttttagttattaaataactaacataa |
1476662 |
T |
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| Q |
304 |
ttccaataatgatgattacttcttgaaaaattaatagtaata |
345 |
Q |
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| T |
1476663 |
ttccaataatgatgattacttcttgaaaaaataatagtaata |
1476704 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 32859933 - 32859970
Alignment:
| Q |
246 |
tggaaacaatttataacatgatcataaattgttttcag |
283 |
Q |
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| T |
32859933 |
tggaaacaatttataacatgttcataaattgttttcag |
32859970 |
T |
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