View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_7 (Length: 332)
Name: NF2454_low_7
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_7 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 14112329 - 14112579
Alignment:
| Q |
69 |
tgccttttctgatccaatctttctgnnnnnnnnnnnncccttaaagtttactttcaaaatgggaactttgaagagaagccaaacccaagattcataaagg |
168 |
Q |
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| T |
14112329 |
tgccttttctgatccaatctttctgttttttgtttttcccttaaagtttactttcaaaatgggaactttgaagagaagccaaacccaagattcataaagg |
14112428 |
T |
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| Q |
169 |
aaacaagactcattggaaaacattcacttcccaaatgggaaatcaatggtctagtagaatatatctctggaggaccacaacctggaggcatgttcttccc |
268 |
Q |
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| T |
14112429 |
aaacaagactcattggaaaacattcacttcccaaatgggaaatcaatggtctagtagaatatatctctggaggaccacaacctggaggcatgttcttccc |
14112528 |
T |
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| Q |
269 |
agtgtcacatggagttcatgcagttagacttggaaatgatgcctccatctc |
319 |
Q |
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| T |
14112529 |
agtgtcacatggagttcatgcagttagacttggaaatgatgcctccatctc |
14112579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 107 - 320
Target Start/End: Original strand, 14125415 - 14125628
Alignment:
| Q |
107 |
ccttaaagtttactttcaaaatgggaactttgaagagaagccaaacccaagattcataaaggaaacaagactcattggaaaacattcacttcccaaatgg |
206 |
Q |
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| T |
14125415 |
ccttaaagttttcttccaaaatgggaactttgagcagcaaccaaacccaaaatacataaagaaaacaagactcattgggaaacatgcacttcccaaatgg |
14125514 |
T |
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| Q |
207 |
gaaatcaatggtctagtagaatatatctctggaggaccacaacctggaggcatgttcttcccagtgtcacatggagttcatgcagttagacttggaaatg |
306 |
Q |
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| T |
14125515 |
gaaaccagtggtctagttgaatatatctctggtgggcctcaacctggaggcatgtacttcccagtgtcacatggagtccatgcagttaggcttggaaatg |
14125614 |
T |
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| Q |
307 |
atgcctccatctca |
320 |
Q |
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| T |
14125615 |
aagcatccatctca |
14125628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 107 - 316
Target Start/End: Original strand, 14129264 - 14129473
Alignment:
| Q |
107 |
ccttaaagtttactttcaaaatgggaactttgaagagaagccaaacccaagattcataaaggaaacaagactcattggaaaacattcacttcccaaatgg |
206 |
Q |
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| T |
14129264 |
ccttaaagttttcttccgaaatgggaactttgagcagcaaccgaacccgggttacataaagcaaacaagactcatggggaaacatgcacttcccaattgg |
14129363 |
T |
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| Q |
207 |
gaaatcaatggtctagtagaatatatctctggaggaccacaacctggaggcatgttcttcccagtgtcacatggagttcatgcagttagacttggaaatg |
306 |
Q |
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| T |
14129364 |
gaaaccaatggtctagttgagtatatcactggtgggccacaacctggaggcatgttcttcccagtgtcacatggtgttcatgctgttaggcttggaaatg |
14129463 |
T |
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| Q |
307 |
atgcctccat |
316 |
Q |
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| T |
14129464 |
aagcatccat |
14129473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 56645 - 56459
Alignment:
| Q |
121 |
ttcaaaatgggaactttgaagagaagccaaacccaagattcataaaggaaacaagactcattggaaaacattcacttcccaaatgggaaatcaatggtct |
220 |
Q |
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| T |
56645 |
ttcaaaatggaaactttgaggagaagccaaaccctaaagacctaaagaataccaagctcattggaaaattttcactaccaaaatgggaaatcaatggttt |
56546 |
T |
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| Q |
221 |
agtagaatatatctctggaggaccacaacctggaggcatgttcttcccagtgtcacatggagttcatgcagttagacttggaaatga |
307 |
Q |
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| T |
56545 |
ggtagagtatgtgactggtggtcctcaaccaggaggcatgttttttccagtgactcatggaacacatgctgtgagactaggaaatga |
56459 |
T |
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