View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2454_low_9 (Length: 318)
Name: NF2454_low_9
Description: NF2454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2454_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 85 - 318
Target Start/End: Complemental strand, 49482137 - 49481883
Alignment:
| Q |
85 |
ctgaataggcatggatttgattctctaaaattaataaataaataatgtattttaaagataaagatcaatgataatatctttgatctttatctt------- |
177 |
Q |
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| T |
49482137 |
ctgaataggcatggatttgattctctaaaattaataaataaataatgtattttaaagataaagatcaatgataatatctttgatctttatctttatcatt |
49482038 |
T |
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| Q |
178 |
--------------gataaagttgtttaactattaattattacaagaaaaaatagctttttaaattaactgttgatttttacacttccactctttatttt |
263 |
Q |
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| T |
49482037 |
caccactagtgaatgataaagttgtttaactattaattattacaagaaaaaatagctgtttaaattaactgttgatttttacacttccactctttatttt |
49481938 |
T |
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| Q |
264 |
ttgaagcacactagataacttaatagttgacaagatatttggtaaggccgactaa |
318 |
Q |
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| T |
49481937 |
ttgaagcacactagataacttaatagttgacaagatatttggtaaggccgactaa |
49481883 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 49482043 - 49482083
Alignment:
| Q |
137 |
taaagataaagatcaatgataatatctttgatctttatctt |
177 |
Q |
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| T |
49482043 |
taaagataaagatcaaagatattatcattgatctttatctt |
49482083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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