View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2455_low_10 (Length: 277)
Name: NF2455_low_10
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 45078279 - 45078030
Alignment:
| Q |
11 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtg |
110 |
Q |
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| T |
45078279 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtg |
45078180 |
T |
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| Q |
111 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgcta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
45078179 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
45078080 |
T |
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| Q |
211 |
cgaatgtgactatcgcaggcaaacttgaaggaatttcgaacgaccctttt |
260 |
Q |
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| T |
45078079 |
agaatgtgactattgcgggcaaacttgaaggaatttctaacgaccctttt |
45078030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 45082574 - 45082326
Alignment:
| Q |
12 |
acagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtgt |
111 |
Q |
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|||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| |
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| T |
45082574 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
45082475 |
T |
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| Q |
112 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgctac |
211 |
Q |
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| T |
45082474 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
45082375 |
T |
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| Q |
212 |
gaatgtgactatcgcaggcaaacttgaaggaatttcgaacgaccctttt |
260 |
Q |
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| T |
45082374 |
gaatgtgactattgcgggcaaagttgaaggaatttctaacgaccctttt |
45082326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 45075048 - 45074800
Alignment:
| Q |
12 |
acagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtgt |
111 |
Q |
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|||||||| ||| ||||||| ||| | || |||||||||| || | ||||||||||||||| |||||||||||| ||||| | |||||||||||||| | |
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| T |
45075048 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
45074949 |
T |
|
| Q |
112 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgctac |
211 |
Q |
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| T |
45074948 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaa |
45074849 |
T |
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| Q |
212 |
gaatgtgactatcgcaggcaaacttgaaggaatttcgaacgaccctttt |
260 |
Q |
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| T |
45074848 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgaccctttt |
45074800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 45067489 - 45067241
Alignment:
| Q |
11 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtg |
110 |
Q |
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||||||||| ||| ||||||| ||| | || || |||||||| || | ||||||||| || ||||||||||||||| ||||||| |||||||||||||| |
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| T |
45067489 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
45067390 |
T |
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| Q |
111 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgcta |
210 |
Q |
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|||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
45067389 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgcta |
45067290 |
T |
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| Q |
211 |
cgaatgtgactatcgcaggcaaacttgaaggaatttcgaacgacccttt |
259 |
Q |
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| T |
45067289 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgacccttt |
45067241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 34504823 - 34504572
Alignment:
| Q |
12 |
acagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaat---gaaatatg |
108 |
Q |
| |
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|||||||| ||| ||||||| ||||| || ||||||||||| | | ||||||||||||||| ||||||||| || | ||||| ||||| || ||||| |
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| T |
34504823 |
acagaatcagctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatg |
34504724 |
T |
|
| Q |
109 |
tgttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgc |
208 |
Q |
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|||||||| ||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |||||| | || ||||||||||| ||| |
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| T |
34504723 |
tgttttggttgacagggtcttatggagaccaccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgc |
34504624 |
T |
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| Q |
209 |
tacgaatgtgactatcgcaggcaaacttgaaggaatttcgaacgaccctttt |
260 |
Q |
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|| ||||||||| | || || |||||||||||||||| || || |||||| |
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| T |
34504623 |
taagaatgtgaccgttgcggggcaacttgaaggaatttctaatgatcctttt |
34504572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 17584522 - 17584404
Alignment:
| Q |
16 |
aatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtgttttg |
115 |
Q |
| |
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|||| ||||||||||| ||| |||| || |||||||| || | |||||| | || || || | ||||||| | ||||| |||||||||||||||||||| |
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| T |
17584522 |
aatcagctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttg |
17584423 |
T |
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| Q |
116 |
gatgacaggttcttatgga |
134 |
Q |
| |
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|||||||||||| |||||| |
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| T |
17584422 |
gatgacaggttcatatgga |
17584404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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