View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2455_low_12 (Length: 259)
Name: NF2455_low_12
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_12 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 46415764 - 46415837
Alignment:
| Q |
186 |
caatcaatatatccatgcactcagcttttctctatgtcctgccattaaatctaaaatgaaggtaacaaatacac |
259 |
Q |
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| T |
46415764 |
caatcaatatatccatgcactcagcttttctctatgtcctgccattaaatctaaaatgaaggtaacaaatacac |
46415837 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 2444211 - 2444150
Alignment:
| Q |
53 |
cattaattaggaagaaaaagacaagtagttaatgcttcatgcatatagtgcgacaaatatgt |
114 |
Q |
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| T |
2444211 |
cattaattaggatggaaaaggcaagtagttgatgcttcgtgcatatggtgcgacaaatatgt |
2444150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 20131696 - 20131637
Alignment:
| Q |
53 |
cattaattaggaagaaaaagacaagtagttaatgcttcatgcatatagtgcgacaaatat |
112 |
Q |
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| T |
20131696 |
cattaattaggatggaaaatgcaagtagttaatgcttcgtgcatatggtgcgacaaatat |
20131637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 9264603 - 9264516
Alignment:
| Q |
27 |
acacaagggatctcattattgaaaaccattaattaggaagaaaaagacaagtagttaatgcttcatgcatatagtgcgacaaatatgt |
114 |
Q |
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| T |
9264603 |
acacaagggatctcattattgaaaaccattaattaagaagaaaaagacaaatagtcaatgcttcgtgcatatagtgcgacaaatatgt |
9264516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 16089371 - 16089308
Alignment:
| Q |
53 |
cattaattaggaagaaaaagacaagtagttaatgcttcatgcatatagtgcgacaaatatgtcg |
116 |
Q |
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| T |
16089371 |
cattaattaggatggaaaaggcaagtagttaatgtttcgtgcatatggtgcgacaaatatgtcg |
16089308 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 17956676 - 17956619
Alignment:
| Q |
53 |
cattaattaggaagaaaaagacaagtagttaatgcttcatgcatatagtgcgacaaatat |
112 |
Q |
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| T |
17956676 |
cattaattaggatggaaaaggc--gtagttaatgcttcgtgcatatggtgcgacaaatat |
17956619 |
T |
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