View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2455_low_13 (Length: 254)
Name: NF2455_low_13
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 27032021 - 27031835
Alignment:
| Q |
18 |
attttaaccttaatctattctataaaatatcttctattagtgatacaaaatctataaatctatgcatatacacgaaatattgatacaaatacaatacttt |
117 |
Q |
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| T |
27032021 |
attttaaccttaatctattctataaaatatcttctattactgatacaaaatctataaatctatgcatatacacgaaatattgatacaaatacaatacttt |
27031922 |
T |
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| Q |
118 |
tgattcattatggcaacaattttctttgtaacaatgc-aactttttctttcaattgactactttcatgtgattaaatttttcttctt |
203 |
Q |
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| T |
27031921 |
tgattcattatggcaacaattttctttgtaacaatgcaaactttttcttacaagtgactactttaatgtgattaaatttttcttctt |
27031835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 27072943 - 27073115
Alignment:
| Q |
26 |
cttaatctattctataaaatatcttctattagtgatacaaaatctataaatctatgcatatacacgaaatattgatacaaatacaatacttttgattcat |
125 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27072943 |
cttaatctattctataaaatatcttctattaatgata----atctataaatctatgcatttacacgaaatattgatacaaatacaatacttttgattcat |
27073038 |
T |
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| Q |
126 |
tatggcaacaattttctttgtaacaatgcaactttttctttcaattgactactttcatgtgattaaatttttcttct |
202 |
Q |
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| T |
27073039 |
tatggcaacaattttctttgaaacaatgcaactttttctttcaagtgactattttaatgtgattaaatttttcttct |
27073115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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