View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2455_low_15 (Length: 245)

Name: NF2455_low_15
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2455_low_15
NF2455_low_15
[»] chr7 (7 HSPs)
chr7 (35-228)||(27035883-27036090)
chr7 (1-37)||(37832447-37832483)
chr7 (1-34)||(25200397-25200430)
chr7 (1-34)||(30864455-30864488)
chr7 (1-34)||(31274567-31274600)
chr7 (2-34)||(27778079-27778111)
chr7 (1-33)||(37325857-37325889)
[»] chr8 (9 HSPs)
chr8 (1-38)||(1065413-1065450)
chr8 (1-34)||(43419879-43419912)
chr8 (1-34)||(6004944-6004977)
chr8 (1-34)||(20288533-20288566)
chr8 (1-34)||(21075162-21075195)
chr8 (1-34)||(30927969-30928002)
chr8 (1-34)||(36497661-36497694)
chr8 (1-34)||(41746820-41746853)
chr8 (1-37)||(12732839-12732875)
[»] chr3 (10 HSPs)
chr3 (1-34)||(38944179-38944212)
chr3 (1-34)||(3069612-3069645)
chr3 (1-34)||(7867749-7867782)
chr3 (1-34)||(20714243-20714276)
chr3 (1-34)||(30400194-30400227)
chr3 (1-34)||(32931956-32931989)
chr3 (1-34)||(36818956-36818989)
chr3 (1-34)||(45205288-45205321)
chr3 (1-34)||(46344414-46344447)
chr3 (1-34)||(50879595-50879628)
[»] chr2 (9 HSPs)
chr2 (1-34)||(14140375-14140408)
chr2 (4-34)||(6884910-6884940)
chr2 (4-34)||(29893610-29893640)
chr2 (1-34)||(21490703-21490736)
chr2 (1-34)||(25801840-25801873)
chr2 (1-34)||(30487507-30487540)
chr2 (1-34)||(34144589-34144622)
chr2 (1-34)||(37966367-37966400)
chr2 (1-33)||(20974354-20974386)
[»] chr1 (7 HSPs)
chr1 (1-34)||(6829821-6829854)
chr1 (1-34)||(7371986-7372019)
chr1 (1-34)||(10384211-10384244)
chr1 (1-34)||(13813558-13813591)
chr1 (1-34)||(18610773-18610806)
chr1 (1-34)||(32938859-32938892)
chr1 (1-33)||(9882697-9882729)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-37)||(19729-19765)
[»] scaffold0662 (1 HSPs)
scaffold0662 (1-34)||(1078-1111)
[»] chr6 (5 HSPs)
chr6 (1-34)||(2056783-2056816)
chr6 (1-34)||(9954548-9954581)
chr6 (1-34)||(12441538-12441571)
chr6 (1-34)||(27334858-27334891)
chr6 (1-34)||(27395598-27395631)
[»] chr5 (10 HSPs)
chr5 (1-34)||(125092-125125)
chr5 (1-34)||(3263546-3263579)
chr5 (1-34)||(4954466-4954499)
chr5 (1-34)||(9594478-9594511)
chr5 (1-34)||(9599766-9599799)
chr5 (1-34)||(12718418-12718451)
chr5 (1-34)||(12779644-12779677)
chr5 (1-34)||(14508195-14508228)
chr5 (1-34)||(15918028-15918061)
chr5 (1-34)||(30574415-30574448)
[»] chr4 (13 HSPs)
chr4 (1-34)||(940297-940330)
chr4 (1-34)||(1796366-1796399)
chr4 (1-34)||(5208365-5208398)
chr4 (1-34)||(7037522-7037555)
chr4 (1-34)||(27001447-27001480)
chr4 (1-34)||(33093142-33093175)
chr4 (1-34)||(35017153-35017186)
chr4 (1-34)||(39241328-39241361)
chr4 (1-34)||(47014939-47014972)
chr4 (1-34)||(51039154-51039187)
chr4 (1-34)||(51377331-51377364)
chr4 (1-34)||(51717320-51717353)
chr4 (1-34)||(55268039-55268072)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 27036090 - 27035883
Alignment:
Q  35 catacacaataatgcatgcaaaaatgaagag--tacaatcaactcgacacttgtccctcgtatatttgaaatgagacctagaag------------taat 120  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||            ||||    
T  27036090 catacacaataatgcatgcaaaaatgaagagagtacaataaactcgacacttgtccctcgtatatttgaaatgagacctagaagctaaactgaaagtaat 27035991  T
Q  121 aatataattgaagagaaaacgaagccagacccaccatttccatctccaaccacttatcattgacaacatattgtacgtacaacaggcttggatcaactgg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27035990 aatataattgaagagaaaacgaagccagacccaccatttccatctccaaccacttatcattgacaacatattgtacgtacaacaggcttggatcaactgg 27035891  T
Q  221 tcaagagt 228  Q
    ||||||||    
T  27035890 tcaagagt 27035883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37832483 - 37832447
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctccat 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  37832483 ttgtcacaaaatagttgtacaaatatcatttctccat 37832447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25200397 - 25200430
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  25200397 ttgtcacaaattggttgtacaaatatcatttctc 25200430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30864455 - 30864488
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  30864455 ttgtcacaaattggttgtacaaatatcatttctc 30864488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31274567 - 31274600
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  31274567 ttgtcacaaattggttgtacaaatatcatttctc 31274600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 27778111 - 27778079
Alignment:
Q  2 tgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||| |||||||||||||||||||||||    
T  27778111 tgtcacaaagtagttgtacaaatatcatttctc 27778079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37325857 - 37325889
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  37325857 ttgtcacaaattggttgtacaaatatcatttct 37325889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1065450 - 1065413
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctccata 38  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1065450 ttgtcacaaattggttgtacaaatatcatttctccata 1065413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 43419912 - 43419879
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  43419912 ttgtcacaaattagttgtacaaatatcatttctc 43419879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6004977 - 6004944
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  6004977 ttgtcacaaagtagttgtacaaatatcatttctc 6004944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20288566 - 20288533
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  20288566 ttgtcacaaattggttgtacaaatatcatttctc 20288533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21075195 - 21075162
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  21075195 ttgtcacaaattggttgtacaaatatcatttctc 21075162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30927969 - 30928002
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  30927969 ttgtcacaaattggttgtacaaatatcatttctc 30928002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36497694 - 36497661
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  36497694 ttgtcacaaaatagttgtacaaatatcatttctc 36497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41746853 - 41746820
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||| |||||||||||||||||||||||||    
T  41746853 ttgtcacagattagttgtacaaatatcatttctc 41746820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12732875 - 12732839
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctccat 37  Q
    |||||||||| | ||||||||||||||||||||||||    
T  12732875 ttgtcacaaagtggttgtacaaatatcatttctccat 12732839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38944179 - 38944212
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38944179 ttgtcacaaattagttgtacaaatatcatttctc 38944212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3069612 - 3069645
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  3069612 ttgtcacaaattggttgtacaaatatcatttctc 3069645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7867749 - 7867782
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  7867749 ttgtcacaaaatagttgtacaaatatcatttctc 7867782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20714276 - 20714243
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  20714276 ttgtcacaaattggttgtacaaatatcatttctc 20714243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30400194 - 30400227
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  30400194 ttgtcacaaatttgttgtacaaatatcatttctc 30400227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32931956 - 32931989
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  32931956 ttgtcacaaattggttgtacaaatatcatttctc 32931989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36818989 - 36818956
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  36818989 ttgtcacaaattggttgtacaaatatcatttctc 36818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45205321 - 45205288
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  45205321 ttgtcacaaaatagttgtacaaatatcatttctc 45205288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46344447 - 46344414
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||| |||||||||||||||||||||||||||||    
T  46344447 ttgtaacaaattagttgtacaaatatcatttctc 46344414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 50879628 - 50879595
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  50879628 ttgtcacaatttagttgtacaaatatcatttctc 50879595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14140375 - 14140408
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  14140375 ttgtcacaaattagttgtacaaatatcatttctc 14140408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 6884940 - 6884910
Alignment:
Q  4 tcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||||||||||||||||||||||    
T  6884940 tcacaaattagttgtacaaatatcatttctc 6884910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 29893640 - 29893610
Alignment:
Q  4 tcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||||||||||||||||||||||    
T  29893640 tcacaaattagttgtacaaatatcatttctc 29893610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21490736 - 21490703
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  21490736 ttgtcacaaagtagttgtacaaatatcatttctc 21490703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25801840 - 25801873
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  25801840 ttgtcacaaattggttgtacaaatatcatttctc 25801873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30487507 - 30487540
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  30487507 ttgtcacaaattggttgtacaaatatcatttctc 30487540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34144589 - 34144622
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  34144589 ttgtcacaaattggttgtacaaatatcatttctc 34144622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37966400 - 37966367
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  37966400 ttgtcacaaattggttgtacaaatatcatttctc 37966367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20974386 - 20974354
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttct 33  Q
    ||||||||||||||||||| |||||||||||||    
T  20974386 ttgtcacaaattagttgtaaaaatatcatttct 20974354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6829821 - 6829854
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6829821 ttgtcacaaattagttgtacaaatatcatttctc 6829854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7371986 - 7372019
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||| |||||||||||||||||||||||||||    
T  7371986 ttgtcataaattagttgtacaaatatcatttctc 7372019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10384244 - 10384211
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  10384244 ttgtcacaaagtagttgtacaaatatcatttctc 10384211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13813591 - 13813558
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  13813591 ttgtcacaaattggttgtacaaatatcatttctc 13813558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18610806 - 18610773
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  18610806 ttgtcacaaaatagttgtacaaatatcatttctc 18610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32938892 - 32938859
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  32938892 ttgtcacaaattaattgtacaaatatcatttctc 32938859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9882697 - 9882729
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttct 33  Q
    |||||||||| ||||||||||||||||||||||    
T  9882697 ttgtcacaaaatagttgtacaaatatcatttct 9882729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19729 - 19765
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctccat 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  19729 ttgtcacaaaatagttgtacaaatatcatttctccat 19765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1111 - 1078
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  1111 ttgtcacaaaatagttgtacaaatatcatttctc 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2056816 - 2056783
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  2056816 ttgtcacaaattggttgtacaaatatcatttctc 2056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9954581 - 9954548
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  9954581 ttgtcacaaattggttgtacaaatatcatttctc 9954548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12441571 - 12441538
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  12441571 ttgtcacaaagtagttgtacaaatatcatttctc 12441538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27334891 - 27334858
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  27334891 ttgtcacaaaatagttgtacaaatatcatttctc 27334858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27395631 - 27395598
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  27395631 ttgtcacaaaatagttgtacaaatatcatttctc 27395598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 125125 - 125092
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  125125 ttgtcacaaagtagttgtacaaatatcatttctc 125092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3263546 - 3263579
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  3263546 ttgtcacaaattggttgtacaaatatcatttctc 3263579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4954499 - 4954466
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  4954499 ttgtcacaaattaattgtacaaatatcatttctc 4954466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9594511 - 9594478
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  9594511 ttgtcacaaattggttgtacaaatatcatttctc 9594478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9599766 - 9599799
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  9599766 ttgtcacaaattggttgtacaaatatcatttctc 9599799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12718418 - 12718451
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  12718418 ttgtcacaaattggttgtacaaatatcatttctc 12718451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12779644 - 12779677
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  12779644 ttgtcacaaattggttgtacaaatatcatttctc 12779677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14508195 - 14508228
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  14508195 ttgtcacaaaatagttgtacaaatatcatttctc 14508228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15918028 - 15918061
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  15918028 ttgtcacaaattaattgtacaaatatcatttctc 15918061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30574415 - 30574448
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  30574415 ttgtcacaaattggttgtacaaatatcatttctc 30574448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 940297 - 940330
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  940297 ttgtcacaaaatagttgtacaaatatcatttctc 940330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1796399 - 1796366
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  1796399 ttgtcacaaattggttgtacaaatatcatttctc 1796366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5208365 - 5208398
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  5208365 ttgtcacaaattggttgtacaaatatcatttctc 5208398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7037522 - 7037555
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  7037522 ttgtcacaaattggttgtacaaatatcatttctc 7037555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27001447 - 27001480
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  27001447 ttgtcacaaattggttgtacaaatatcatttctc 27001480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33093142 - 33093175
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  33093142 ttgtcacaaaatagttgtacaaatatcatttctc 33093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35017186 - 35017153
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  35017186 ttgtcacaaaatagttgtacaaatatcatttctc 35017153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39241328 - 39241361
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  39241328 ttgtcacaaattggttgtacaaatatcatttctc 39241361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47014972 - 47014939
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  47014972 ttgtcacaaaatagttgtacaaatatcatttctc 47014939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51039154 - 51039187
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  51039154 ttgtcacaaagtagttgtacaaatatcatttctc 51039187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51377331 - 51377364
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  51377331 ttgtcacaaattggttgtacaaatatcatttctc 51377364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51717320 - 51717353
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  51717320 ttgtcacaaattggttgtacaaatatcatttctc 51717353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 55268039 - 55268072
Alignment:
Q  1 ttgtcacaaattagttgtacaaatatcatttctc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  55268039 ttgtcacaaattggttgtacaaatatcatttctc 55268072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University