View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2455_low_16 (Length: 241)
Name: NF2455_low_16
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 26008997 - 26008781
Alignment:
| Q |
8 |
ccaagaatataccataattgttgggatcttcttaaactctgaaatggacataatttaatgaaaaatatatgatttaacatcaagatagatcttaatccac |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26008997 |
ccaaaaatataccataattgttgggatctttttaaactccgaaatggacataatttaatgaaaaatatatgatttagcatcaagatagatcttaatccac |
26008898 |
T |
|
| Q |
108 |
atgcttcataagttagagacaaataaatggtttaacatcaagctatatgaagccaaactaaatttgtgatagaaaatatttgcaaacg-aaaaatagcag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
26008897 |
atgcttcataagttagagacaaataaatggtttaacatcaagctata-gaaaccaaactaaatttgtgatagaaaatattcgcaaacgaaaaaatagcag |
26008799 |
T |
|
| Q |
207 |
cctaatcaacacttaaac |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26008798 |
cctaatcaacacttaaac |
26008781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 45050022 - 45049886
Alignment:
| Q |
8 |
ccaagaatataccataattgttgggatcttcttaaactctgaaatggacataatttaatgaaaaatatatgatttaacatcaagatagatcttaatccac |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45050022 |
ccaaaaatataccataattgttaggatcttcttaaactctgaaatggacataatttaatgaaaaatatatgatttaacatcaagatagatcttaatccac |
45049923 |
T |
|
| Q |
108 |
atgcttcataagttagagacaaataaatggtttaaca |
144 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45049922 |
acgctacataagttagagacaaataaatggtttaaca |
45049886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University