View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2455_low_17 (Length: 236)
Name: NF2455_low_17
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36311898 - 36312118
Alignment:
| Q |
1 |
caaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311898 |
caaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtactccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatc |
36311997 |
T |
|
| Q |
101 |
acatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaacctgcaactggtaatagtttgcagagtggcgattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311998 |
acatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaacctgcaactggtaatagtttgcagagtggcgattca |
36312097 |
T |
|
| Q |
201 |
tgaccgagataacaacccttt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36312098 |
tgaccgagataacaacccttt |
36312118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 36304366 - 36304557
Alignment:
| Q |
9 |
cttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatcacatgttg |
108 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||||||| || || |||| ||||| || || |||||||||| ||||||||||| | |||||| || |
|
|
| T |
36304366 |
cttctcgatgagacatcagcttgttatactcctgcaagtactcagggttacccgtgtagtctgtaagcttctccatctcaacagcttgaagcacatgctg |
36304465 |
T |
|
| Q |
109 |
aatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaacctgcaactggtaatagtttgcagagtggcgattca |
200 |
Q |
| |
|
||||||||| | |||||||||| |||| ||||| ||||||||||| | | |||||| | ||| |||||||| ||||| || ||||||| |
|
|
| T |
36304466 |
aatggaattctttttcttcttagagataaggtgctcagcagctctacgaattgaaacctgaagctgataatagttagcagaatgacgattca |
36304557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University