View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2455_low_19 (Length: 203)

Name: NF2455_low_19
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2455_low_19
NF2455_low_19
[»] chr7 (3 HSPs)
chr7 (87-189)||(21688506-21688609)
chr7 (67-160)||(21738233-21738326)
chr7 (111-167)||(577411-577467)
[»] scaffold0182 (1 HSPs)
scaffold0182 (67-174)||(15293-15400)
[»] scaffold0008 (1 HSPs)
scaffold0008 (78-167)||(53730-53818)
[»] chr3 (4 HSPs)
chr3 (76-157)||(537930-538010)
chr3 (110-164)||(54142697-54142751)
chr3 (70-156)||(38808002-38808087)
chr3 (77-142)||(27946781-27946846)
[»] chr2 (1 HSPs)
chr2 (110-166)||(25523961-25524017)
[»] chr5 (1 HSPs)
chr5 (113-167)||(18925268-18925322)
[»] chr4 (1 HSPs)
chr4 (117-167)||(7711992-7712042)
[»] chr8 (2 HSPs)
chr8 (111-167)||(4033257-4033313)
chr8 (76-154)||(4414738-4414815)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 21688506 - 21688609
Alignment:
Q  87 aataatgagatctttattattcggtaatattttgacatatttctaatctaccattttttaatatttaataacaactatttctttgtttctacca-taaca 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| || |||||    
T  21688506 aataatgagatctttattattcggtaatattttgacatatttctaatctaccattttataatattttataacaattatttctttgtttctatcattaaca 21688605  T
Q  186 tatt 189  Q
    ||||    
T  21688606 tatt 21688609  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 21738233 - 21738326
Alignment:
Q  67 taattaacttcatctttatcaataatgagatctttattattcggtaatattttgacatatttctaatctaccattttttaatatttaataacaa 160  Q
    |||||||| |||||||||||| |||| |||  |||| |||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  21738233 taattaacgtcatctttatcattaattagaattttagtattcaataatattttgacatatttccaatctaccattttataatatttaataacaa 21738326  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 577467 - 577411
Alignment:
Q  111 taatattttgacatatttctaatctaccattttttaatatttaataacaactatttc 167  Q
    |||||||||||||||||| || ||||||| ||| ||||||||||||  |||||||||    
T  577467 taatattttgacatatttttattctaccactttataatatttaatataaactatttc 577411  T

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Target: scaffold0182 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 15293 - 15400
Alignment:
Q  67 taattaacttcatctttatcaataatgagatctttattattcggtaatattttgacatatttctaatctaccattttttaatatttaataacaactattt 166  Q
    |||||||| |||||||||||| ||||||||  ||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||    
T  15293 taattaacgtcatctttatcattaatgagaattttattattcaataatattttgacatatttccaatctaccattttataatatttaataacaacttttt 15392  T
Q  167 ctttgttt 174  Q
    ||||||||    
T  15393 ctttgttt 15400  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 53818 - 53730
Alignment:
Q  78 atctttatcaataatgagatctttattattcggtaatattttgacatatttctaatctaccattttttaatatttaataacaactatttc 167  Q
    |||||||||| |||  ||||||||||||||   |||||||||||||||||||||  | |||| ||| ||||||||||||||||| |||||    
T  53818 atctttatcattaactagatctttattatttt-taatattttgacatatttctagacgaccactttataatatttaataacaacaatttc 53730  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 538010 - 537930
Alignment:
Q  76 tcatctttatcaataatgagatctttattattcggtaatattttgacatatttctaatctaccattttttaatatttaataa 157  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||||| |||| || | ||||| ||| |||||||||||||    
T  538010 tcatctttatcaataatgaaatctttaatatttg-taatattttgacaaatttttagtttaccactttataatatttaataa 537930  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 54142751 - 54142697
Alignment:
Q  110 gtaatattttgacatatttctaatctaccattttttaatatttaataacaactat 164  Q
    ||||||||||||||||||| ||| |||| ||||| ||||||||| ||||||||||    
T  54142751 gtaatattttgacatatttttaacctacgattttgtaatatttagtaacaactat 54142697  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 38808002 - 38808087
Alignment:
Q  70 ttaacttcatctttatcaataatgagatctttattattcggtaatattttgacatatttctaatctaccattttttaatatttaata 156  Q
    ||||| || ||||||||| |||||||||||||| ||||   |||||| ||||||||||| || ||||||| ||| || |||||||||    
T  38808002 ttaacatcgtctttatcattaatgagatctttactatt-tttaatatcttgacatatttttagtctaccagtttatactatttaata 38808087  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 27946781 - 27946846
Alignment:
Q  77 catctttatcaataatgagatctttattattcggtaatattttgacatatttctaatctaccattt 142  Q
    ||||||||||| |||||| || |||||||||    ||||||||||||||||| |||||||| ||||    
T  27946781 catctttatcattaatgaaatatttattatttttaaatattttgacatatttttaatctactattt 27946846  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 25523961 - 25524017
Alignment:
Q  110 gtaatattttgacatatttctaatctaccattttttaatatttaataacaactattt 166  Q
    |||||||||| | |||||| |||||||||| ||| ||||||||||||||||||||||    
T  25523961 gtaatattttaatatatttataatctaccactttataatatttaataacaactattt 25524017  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 18925322 - 18925268
Alignment:
Q  113 atattttgacatatttctaatctaccattttttaatatttaataacaactatttc 167  Q
    ||||||| |||||||| || ||||||| ||| |||||||||||||||||||||||    
T  18925322 atattttaacatatttttagtctaccactttataatatttaataacaactatttc 18925268  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 7711992 - 7712042
Alignment:
Q  117 tttgacatatttctaatctaccattttttaatatttaataacaactatttc 167  Q
    |||||||||||| || ||||||| ||| |||||||||||||||||||||||    
T  7711992 tttgacatatttttagtctaccactttataatatttaataacaactatttc 7712042  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 4033313 - 4033257
Alignment:
Q  111 taatattttgacatatttctaatctaccattttttaatatttaataacaactatttc 167  Q
    ||||||||| |||||| | || ||||||| ||| |||||||||||||||||||||||    
T  4033313 taatattttcacatatatttagtctaccactttataatatttaataacaactatttc 4033257  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 4414815 - 4414738
Alignment:
Q  76 tcatctttatcaataatgagatctttattattcggtaatattttgacatatttctaatctaccattttttaatatttaa 154  Q
    ||||| ||| || |||||| | |||||||||| | ||||| |||||||||||| ||||||| |||||| ||||||||||    
T  4414815 tcatcgttaacattaatgaaaactttattatttg-taatactttgacatatttttaatctatcattttataatatttaa 4414738  T

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