View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2455_low_20 (Length: 201)
Name: NF2455_low_20
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 52126269 - 52126089
Alignment:
| Q |
1 |
tatattttctgcgcaggcgagaattggtaataatatgaattttagttagagaaacatatgcacttcgtcgtaataagacggatagtttatttttaatcta |
100 |
Q |
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| T |
52126269 |
tatattttctgcgcaggcgagaattcgtaataatatgaattttagttagagaaacatatgcacttcgtcgtaataagactgatagtttatttttaatcta |
52126170 |
T |
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| Q |
101 |
tctatgttagtcaagcaaacttgaaaagttactgccaatcctcactctttggtgacttaagttctcaaagccagatatttt |
181 |
Q |
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| T |
52126169 |
tctatgttagtcaagcaagcttgaaaagttactgccaatcctcactctttggtgacttaagttctcaaagccaaatatttt |
52126089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 52126095 - 52125916
Alignment:
| Q |
2 |
atattttctgcgcaggcgagaattggtaataatatgaattttagttagagaaacatatgcacttcgtcgtaataagacggatagtttatttttaatctat |
101 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
52126095 |
atattttctgcgcacgcgagaattggtaataatatgaattttagttagagaaacatatgcacttcgtcgtaatatgactgatagtttatttttaatctat |
52125996 |
T |
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| Q |
102 |
ctatgttagtcaagcaaacttgaaaagttactgccaatcctcactctttggtgacttaagttctcaaagccagatatttt |
181 |
Q |
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| T |
52125995 |
ctatgttagtcaagcaagcttgaaaagtttttgccaatcctcgctctttggtgacttaagttctcaaagccaaatatttt |
52125916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 52125922 - 52125741
Alignment:
| Q |
2 |
atattttctgcgcaggcgagaattggtaataatatgaattttagttagagaaacatatgcacttcgtcgtaataagacggatagtttatttttaatctat |
101 |
Q |
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| T |
52125922 |
atattttctgcgcaggcgagaattggtgataatatgaattttagttagagaaacgtatgcacttggtcgtaatatgactgatagtttatttttaatctat |
52125823 |
T |
|
| Q |
102 |
ctatgttagtcaagcaaacttgaaaagttactgccaatcctcactctttggtgacttaagttctcaaagccagatattttatg |
184 |
Q |
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| T |
52125822 |
ctatgttagttaagcaagcttgaaaagttattaccaatcctcactctttggtgactt-agttctcaaaatcaaatattttatg |
52125741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 52126353 - 52126262
Alignment:
| Q |
90 |
tttttaatctatctatgttagtcaagcaaacttgaaaagttactgccaatcctcactctttggtgacttaagttctcaaagccagatatttt |
181 |
Q |
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| T |
52126353 |
tttttaatctatctatgttagtcaagcaagcttgaaaagttattgtcaatcctcactctttggtgacttaagttctcaaagccatatatttt |
52126262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 52125750 - 52125663
Alignment:
| Q |
2 |
atattttctgcgcaggcgagaattggtaataatatgaattttagttagagaaacatatgcacttcgtcgtaataagacggatagttta |
89 |
Q |
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||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||| |
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| T |
52125750 |
atattttatgcggaggtgagaattggtaataatatgaattttacttagagaaatatatgcacttcgtcgtaatatgaatgatagttta |
52125663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 19959659 - 19959700
Alignment:
| Q |
140 |
cctcactctttggtgacttaagttctcaaagccagatatttt |
181 |
Q |
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| T |
19959659 |
cctcattctttggtgactcaagttctcaaagccaaatatttt |
19959700 |
T |
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