View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2455_low_3 (Length: 434)
Name: NF2455_low_3
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 52126330 - 52126747
Alignment:
| Q |
1 |
tgactaacatagatagattaaaaacatataaatttctaaatctcatacctccatattgcttcgatataaagagtttgccgaatgataactaatgaatacc |
100 |
Q |
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| T |
52126330 |
tgactaacatagatagattaaaaacatataaatttctaaatctcatacctccatattgcttcaatataaagagtttgcccaatgataactaatgaatacc |
52126429 |
T |
|
| Q |
101 |
atggttgttgcctctatttgaaccccactaaaaggagttcatcatcttttgagtgtcatcaacaagagattgagggattggaaaaatgctcatgatataa |
200 |
Q |
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| T |
52126430 |
atggttgttgcctcaatttgaaccccactaaaaggagttcatcatcttttgagtgtcatcaacaagagattgagggattggaaaaatgctcatcatataa |
52126529 |
T |
|
| Q |
201 |
gttgaaattgattgaaccacgaaatttatgagatcttctctactagcgcgagacaaagctttactcttccaagaatttattttttgccaaaccttgtcct |
300 |
Q |
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| T |
52126530 |
gttgaaattgattgaaccataaaatttatgagatcttctctactagcgcgagacaaagctttactcttccaagaagttattttttgccaaaccttatcct |
52126629 |
T |
|
| Q |
301 |
tgatgaaatcgaagactgattttttgttccttccaatcatggatgacaaccccaaatactttccgatgccaaaagtaatgttgacatccaagacactagc |
400 |
Q |
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| T |
52126630 |
tgatgaaatcgaagaccgattttttgttccttccaatcatggatgacaaccccaaatactttccgatgccaaaagtaatgttgacatccaagacactagc |
52126729 |
T |
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| Q |
401 |
aacgccatttttcagttg |
418 |
Q |
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| T |
52126730 |
aacaccatttttcagttg |
52126747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 5929711 - 5929757
Alignment:
| Q |
93 |
tgaataccatggttgttgcctctatttgaaccccactaaaaggagtt |
139 |
Q |
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| T |
5929711 |
tgaataccatgattgttgcctctatttgaaccctactaaaaggagtt |
5929757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 5706036 - 5705902
Alignment:
| Q |
14 |
tagattaaaaacatataaatttctaaatctcatacctccatattgcttcgatataaagagtttgccgaatgataactaatgaataccatggttgttgcct |
113 |
Q |
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|||||| ||| |||||||| ||||||||| ||| | | ||| ||||| |||||| |||||||| | ||||||||| |||||| || ||||||||| |
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| T |
5706036 |
tagatttaaagcatataaacttctaaatcccatgcattcatggtgctttgatatagagagtttgtctcatgataactggtgaatattgtgattgttgcct |
5705937 |
T |
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| Q |
114 |
ctatttgaaccccactaaaaggagttcatcatcttt |
149 |
Q |
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| T |
5705936 |
tt-tttgaacccaacgaaaaggagttcatcatcttt |
5705902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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