View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2455_low_4 (Length: 409)
Name: NF2455_low_4
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 34 - 237
Target Start/End: Complemental strand, 15527068 - 15526863
Alignment:
| Q |
34 |
cacatcctagattttttattctgcaccactctaatgtaaagactct--aaataccatggtgcaatttcgtctcatatgaaatatatttattttactgctc |
131 |
Q |
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| T |
15527068 |
cacatcctagattttttattctgcaccattctaatgtaaagactctctaaataccatggtgcaatttcgtctcatatgaaatatatttattttactgctc |
15526969 |
T |
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| Q |
132 |
tatatataagaaaaagctggatcaacaaaaaattatgcattttatataaattttgaaccacatatttgtttacgaaactttttctatggatggaattata |
231 |
Q |
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| T |
15526968 |
tatatataagaaaaagctggatcaacaaaaatttgtgcattttatataaattttgaaccatatatttgtttactaaactttttctatagatgaaattata |
15526869 |
T |
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| Q |
232 |
ttttta |
237 |
Q |
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||||| |
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| T |
15526868 |
gtttta |
15526863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 15526799 - 15526746
Alignment:
| Q |
244 |
ttcaacttacttcataacgcggttaaattttttcatcattcaatcaaaaattat |
297 |
Q |
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|||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
15526799 |
ttcaacttacttcataacacgattaaactttttcatcattcaatcaaaaattat |
15526746 |
T |
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