View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2455_low_7 (Length: 303)
Name: NF2455_low_7
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 15934320 - 15934101
Alignment:
| Q |
65 |
ctaatttgttttttctccttgcaacacaaacgtaagaagcatgttgtggtcttgaatcaattcaagcaaaccattctctatcttaagtaattatgtttat |
164 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15934320 |
ctaatttgttttttctccttgcaacactgacgtaag---catgctgtggtcttgaatcaattcaagcaaaccattctctatctaaagtaattatgtttat |
15934224 |
T |
|
| Q |
165 |
atcttattgatcattgccacaacgtttaagggtagggtctcatttggaaaagttagaacaatctatctataatattccttatattttttgtgtgttaacc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15934223 |
atcttattgatcattgccacaacgtttaagggtagggtctcatttggaaaagttagaacaatctatctataatattccttatattttttgtgtgttaacc |
15934124 |
T |
|
| Q |
265 |
atccggttccatgtggaaggagg |
287 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
15934123 |
atccggttccatgtcgaaggagg |
15934101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 14741276 - 14741236
Alignment:
| Q |
39 |
ataatttaagaaatggtaatactcacctaatttgttttttc |
79 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
14741276 |
ataatttaagaaatggtaacagtcacctaatttgttttttc |
14741236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 14741205 - 14741142
Alignment:
| Q |
117 |
tgaatcaattcaagcaaaccattctctatcttaagtaattatgtttatatcttattgatcattg |
180 |
Q |
| |
|
||||||| ||| | ||| ||||| |||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
14741205 |
tgaatcagttcgatcaagccattttctatcctaagtaattatgtttgtatcttgttgatcattg |
14741142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 14291394 - 14291472
Alignment:
| Q |
101 |
aagcatgttgtggtcttgaatcaattcaagcaaaccattctctatcttaagtaattatgtttatatcttattgatcattgc |
181 |
Q |
| |
|
|||| ||||||| | |||||||| ||||| || ||||| |||||| || ||||| ||||||||||||| ||||||||||| |
|
|
| T |
14291394 |
aagcttgttgtgatgttgaatcagttcaaaca--ccattttctatcctatgtaatcatgtttatatcttgttgatcattgc |
14291472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University