View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2455_low_8 (Length: 296)
Name: NF2455_low_8
Description: NF2455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2455_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 18397373 - 18397638
Alignment:
| Q |
10 |
tcatcagttttattgaatcttgagtgtgaggagaagctgatagttgatgaagacattgaagtaaagcgtatgaagaggcttgagcagctgaaggctagac |
109 |
Q |
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| T |
18397373 |
tcattagttttattgaatcttgagtgtgaggagaagccgatagttgatgaagacattgaagtaaagcgtatgaagaggcttgagcagctgaaggctagac |
18397472 |
T |
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| Q |
110 |
gtgcttatcatgatatatccgaggatggaagtggttgggttccactttcaaataatgatatacatctccaccccgtaaacagagggttcgaaatgacact |
209 |
Q |
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| T |
18397473 |
gtgcttatcatgatatatccgaggatggaagtggttgggttccactttcaaataatg--atacatctccaccccgtaaacagagggttcaaaatgacact |
18397570 |
T |
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| Q |
210 |
ccttcaccagaacctgaagtgaatccatcaacttctaatagaacgggtgctgatttatccccttcgtg |
277 |
Q |
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| T |
18397571 |
ccttcaccagaacctgaagtgaatccatcaacttctaatagaacgggtgctgatttatccccttcgtg |
18397638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 36 - 277
Target Start/End: Complemental strand, 11471393 - 11471154
Alignment:
| Q |
36 |
tgaggagaagctgatagttgatgaagacattgaagtaaagcgtatgaagaggcttgagcagctgaaggctagacgtgcttatcatgatatatccgaggat |
135 |
Q |
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| T |
11471393 |
tgaggagaagccgatagttgatgaagacattgaagtaaagcgtatgaagaggcttgagcagctgaaggctagacgtgcttatcatgatatatccgaggat |
11471294 |
T |
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| Q |
136 |
ggaagtggttgggttccactttcaaataatgatatacatctccaccccgtaaacagagggttcgaaatgacactccttcaccagaacctgaagtgaatcc |
235 |
Q |
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| T |
11471293 |
ggaagtggttgggttccactttcaaataatg--atacatctccaccccgtaaacagagggttcgaaatgacactccttcaccagaacctgaagtgaatcc |
11471196 |
T |
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| Q |
236 |
atcaacttctaatagaacgggtgctgatttatccccttcgtg |
277 |
Q |
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| T |
11471195 |
atcaacttctaatagaacgggtgctgatttatccccttcgtg |
11471154 |
T |
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