View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2456_low_14 (Length: 285)
Name: NF2456_low_14
Description: NF2456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2456_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 47967400 - 47967212
Alignment:
| Q |
1 |
agctgcttatacgccttcaacttctaagaattggctaattagaggaatcatgtaattcatcgacacatgattcatgatttcattcaacaacgttcatgca |
100 |
Q |
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| T |
47967400 |
agctgcttatacgccttcaacttctaagaattggctaattagaggaatcatgtaattcatcgacacatgattcatgatttcattcaacaacgttcatgca |
47967301 |
T |
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| Q |
101 |
tattaaaattctattaggttttggattatctctga--atagaaaacaaggatgatgcaattgacatcatattcttcaatccgattcaat |
187 |
Q |
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| T |
47967300 |
tattaaaattctattaggttttggattatctctgaatatagaaaacaaagatgatgcaattgacatcatattcttcaatccgattcaat |
47967212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 38945239 - 38945288
Alignment:
| Q |
211 |
aatattaaaaattgtgaataaggacacacaacaaacatctatcctttgtt |
260 |
Q |
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| T |
38945239 |
aatattaaaaattgtgaataaggacacacaacaaacatctaacctttgtt |
38945288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2479658 - 2479865
Alignment:
| Q |
1 |
agctgcttatacgccttcaacttctaagaattggctaattagaggaatcatgtaattcatcgacacatgattcatgatttcattcaacaacgttcatgca |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
2479658 |
agctgcttatacaccttcaacttctaagaattggctaattagaggaatcatgtaattc-------catgattcatgatttcattcaacaacgtttatgca |
2479750 |
T |
|
| Q |
101 |
tattaaaattctattaggttttggattatctctgaatagaaaacaaggatgatgcaattgacatcatattcttcaatccgattcaatnnnnnnntggttt |
200 |
Q |
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| T |
2479751 |
tattaaaattctattaggttttggattatctctgaatagaaaacaaagatgatgcaattgatatcatattcttcaatccgattcaataaaaaaatggttt |
2479850 |
T |
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| Q |
201 |
tttctgagataatat |
215 |
Q |
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||||||||||||||| |
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| T |
2479851 |
tttctgagataatat |
2479865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 27110165 - 27109958
Alignment:
| Q |
1 |
agctgcttatacgccttcaacttctaagaattggctaattagaggaatcatgtaattcatcgacacatgattcatgatttcattcaacaacgttcatgca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
27110165 |
agctgcttatacaccttcaacttctaagaattggctaattagaggaatcatgtaattc-------catgattcatgatttcattcaacaacgtttatgca |
27110073 |
T |
|
| Q |
101 |
tattaaaattctattaggttttggattatctctgaatagaaaacaaggatgatgcaattgacatcatattcttcaatccgattcaatnnnnnnntggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
27110072 |
tattaaaattctattaggttttggattatctctgaatagaaaacaaagatgatgcaattgatatcatattcttcaatccgattcaataaaaaaatggttt |
27109973 |
T |
|
| Q |
201 |
tttctgagataatat |
215 |
Q |
| |
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||||||||||||||| |
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| T |
27109972 |
tttctgagataatat |
27109958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 44481007 - 44480817
Alignment:
| Q |
7 |
ttatacgccttcaacttctaagaattggctaattagaggaatcatgtaattcatcgacacatgattcatgatttcattcaacaac-gttcatgc------ |
99 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||| |
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| T |
44481007 |
ttatacaccttcaacttctaagaattg-ctaattagaggaatcacgtaattcatcgacacatgattcacgatttcattcaacaacggttcttgcatatta |
44480909 |
T |
|
| Q |
100 |
---atattaaaattctattaggttttggattatctc--tgaatagaaaacaaggatgatgcaattgacatcatattcttcaatccgattcaat |
187 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44480908 |
aaaatattaaaattctattaggttttggattatctctatgaatagaatacaa-aatgatgcaattgacatcatattcttcaatccgattcaat |
44480817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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