View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2456_low_2 (Length: 305)

Name: NF2456_low_2
Description: NF2456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2456_low_2
NF2456_low_2
[»] chr7 (6 HSPs)
chr7 (74-290)||(2333923-2334139)
chr7 (137-292)||(41482419-41482572)
chr7 (149-294)||(23318950-23319092)
chr7 (149-292)||(39644867-39645007)
chr7 (124-222)||(24429720-24429821)
chr7 (145-245)||(39594642-39594742)
[»] chr1 (7 HSPs)
chr1 (134-294)||(26793718-26793876)
chr1 (149-294)||(50004908-50005050)
chr1 (145-284)||(19806764-19806902)
chr1 (156-284)||(4076365-4076490)
chr1 (134-245)||(9383223-9383335)
chr1 (133-256)||(6768258-6768382)
chr1 (145-245)||(49236174-49236274)
[»] chr4 (9 HSPs)
chr4 (133-290)||(45413765-45413920)
chr4 (135-245)||(36625533-36625644)
chr4 (137-245)||(2183302-2183411)
chr4 (145-245)||(19181421-19181521)
chr4 (134-245)||(43481302-43481412)
chr4 (144-243)||(44126013-44126112)
chr4 (134-222)||(34666439-34666528)
chr4 (137-243)||(26635260-26635367)
chr4 (156-222)||(24155198-24155264)
[»] chr2 (4 HSPs)
chr2 (134-292)||(40626432-40626588)
chr2 (149-244)||(6452471-6452566)
chr2 (150-290)||(6457563-6457700)
chr2 (149-245)||(18665167-18665263)
[»] chr6 (4 HSPs)
chr6 (145-244)||(8547443-8547542)
chr6 (145-222)||(8573796-8573873)
chr6 (125-291)||(18596615-18596779)
chr6 (145-221)||(129107-129183)
[»] chr8 (5 HSPs)
chr8 (156-245)||(31734323-31734412)
chr8 (149-223)||(11066512-11066586)
chr8 (145-245)||(9028642-9028742)
chr8 (145-254)||(22573133-22573242)
chr8 (145-222)||(556809-556888)
[»] chr3 (3 HSPs)
chr3 (145-294)||(38457694-38457844)
chr3 (135-243)||(7038613-7038722)
chr3 (160-292)||(48936324-48936451)
[»] chr5 (2 HSPs)
chr5 (149-222)||(13109739-13109812)
chr5 (145-245)||(34731276-34731376)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 74 - 290
Target Start/End: Original strand, 2333923 - 2334139
Alignment:
Q  74 ctagaagcaataggagtcgaaggaggtttttgaggaatatagaatacgcttgtttgatagttatgctatcagttgctaaccaaccaaaaaccaaggataa 173  Q
    |||||||||||  ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||    
T  2333923 ctagaagcaatgagagtcgaaggaagtttttgaggaatatagaatacgcgtgtttgatagttatgctatcggttgctaaccaaccaaaaaccagagataa 2334022  T
Q  174 aaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaatattcaagatatgatagt 273  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  2334023 aaataacaaaaggtgaataggataggattaaaaataggtttaagttatccaatcctattggtgcaccaaacaccggattgaatattcaggatatgatagt 2334122  T
Q  274 gttatcatatcatgtct 290  Q
    |||||||||||||||||    
T  2334123 gttatcatatcatgtct 2334139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 292
Target Start/End: Original strand, 41482419 - 41482572
Alignment:
Q  137 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 235  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| ||||||| ||||  |||||||||||||||||||  || | |||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggt 41482518  T
Q  236 gcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 292  Q
    |||||||||| |  ||| ||   ||| || |||||||| ||||| ||||||||||||    
T  41482519 gcaccaaacagcgcattaaa---tcaggagatgatagttttatcctatcatgtcttc 41482572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 294
Target Start/End: Original strand, 23318950 - 23319092
Alignment:
Q  149 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 248  Q
    |||||| | |||||||||||||||||||| |||||   | ||||||||||||||  |||||||||||| ||||||  || | |||||| |||||||| |     
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaaca 23319049  T
Q  249 gattgaatattcaagatatgatagtgttatcatatcatgtcttctt 294  Q
    ||||   || ||| |||||||||||||||||||||| |||||||||    
T  23319050 gatt---taatcaggatatgatagtgttatcatatcctgtcttctt 23319092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 39645007 - 39644867
Alignment:
Q  149 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 248  Q
    |||||| ||||||||| ||||||||||||||||||   ||| ||||||||||||  |||| ||||||||||||||  |  |||||| |||||||||| |     
T  39645007 ctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaaca 39644908  T
Q  249 gattgaatattcaagatatgatagtgttatcatatcatgtcttc 292  Q
     |||||| ||  | ||||||||||| |||||||||| |||||||    
T  39644907 aattgaa-at--atgatatgatagttttatcatatcctgtcttc 39644867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 24429821 - 24429720
Alignment:
Q  124 tgtttgatag--ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagtta 220  Q
    ||||||||||  |||||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| || |||||||||  |||||| ||||| |||    
T  24429821 tgtttgatagctttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaatta 24429722  T
Q  221 tc 222  Q
    ||    
T  24429721 tc 24429720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 39594742 - 39594642
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||||||||| | ||||||| |||||||||||| |||||   |||||| |||| |||| | ||||||||||| ||| |  ||||||||||||||||||||    
T  39594742 gttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcaccaaac 39594643  T
Q  245 a 245  Q
    |    
T  39594642 a 39594642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 294
Target Start/End: Complemental strand, 26793876 - 26793718
Alignment:
Q  134 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 232  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||   ||| |||||||||||| |||||| |||||||||||||  |  ||||    
T  26793876 ttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctatt 26793777  T
Q  233 ggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttctt 294  Q
    ||||||||||||| | |||||||   ||| |||||||||||  |||||||||||||||||||    
T  26793776 ggtgcaccaaacaacggattgaa---tcaggatatgatagttctatcatatcatgtcttctt 26793718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 294
Target Start/End: Original strand, 50004908 - 50005050
Alignment:
Q  149 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 248  Q
    |||||| ||||||||| ||||||||||||||||||  |||| |||||||||||| ||||||||||||| ||||||  | |||||||||||||||||| |     
T  50004908 ctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaacatca 50005007  T
Q  249 gattgaatattcaagatatgatagtgttatcatatcatgtcttctt 294  Q
     |||  | ||| ||||||||||||| |||||||||| | |||||||    
T  50005008 aatt--agatt-aagatatgatagttttatcatatcctatcttctt 50005050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 19806764 - 19806902
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgc--accaa 242  Q
    |||| ||||| ||||||||| |||||| | || ||||||  ||||||||||||||||| ||||||||||||| ||||||  || ||||| |||  |||||    
T  19806764 gttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcctttcctattgatgcaaaccaa 19806863  T
Q  243 acacctgattgaatattcaagatatgatagtgttatcatatc 284  Q
    ||||| |||||||||   | |||| |||||||||||||||||    
T  19806864 acaccagattgaata---aggataggatagtgttatcatatc 19806902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 4076365 - 4076490
Alignment:
Q  156 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaa 255  Q
    ||||||||| |||||| | || ||||||  ||||||||||||||||| | ||||||||||| ||||||  || ||||| ||||||||||||| |||| ||    
T  4076365 accaaaaactaaggattagaaaaacaaagagtgaataggataggattagtaataggtttaatttatcctttcctattgatgcaccaaacaccagattaaa 4076464  T
Q  256 tattcaagatatgatagtgttatcatatc 284  Q
    ||   | | ||||||||||||||||||||    
T  4076465 ta---agggtatgatagtgttatcatatc 4076490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 9383223 - 9383335
Alignment:
Q  134 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 232  Q
    |||||||||||| ||||||||| | ||||||  |||||| |||||||||||  |||| ||||||| |||| ||||| ||||||| ||||||  || ||||    
T  9383223 ttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctatt 9383322  T
Q  233 ggtgcaccaaaca 245  Q
    |||||||||||||    
T  9383323 ggtgcaccaaaca 9383335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 256
Target Start/End: Complemental strand, 6768382 - 6768258
Alignment:
Q  133 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttat 231  Q
    ||||||||||||| || |||||| ||||||||  ||||||||||||||||||   || |||| |||||||  |||||| |||||| |||||   |  |||    
T  6768382 gttatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcattttctat 6768283  T
Q  232 tggtgcaccaaacacctgattgaat 256  Q
    |||| ||||||||| | ||||||||    
T  6768282 tggtacaccaaacaacagattgaat 6768258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 49236274 - 49236174
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||||||||| |||||||||||||||||  ||||| |||   ||  ||||||||||   |||||| |||||| ||||||  |  ||||||||||||||||    
T  49236274 gttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggataggaaatgaaatatgtttaatttatccttttctattggtgcaccaaac 49236175  T
Q  245 a 245  Q
    |    
T  49236174 a 49236174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 290
Target Start/End: Original strand, 45413765 - 45413920
Alignment:
Q  133 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttat 231  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||   |  ||||||||||||  ||||||||||||| ||||||  || |||    
T  45413765 gttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctat 45413864  T
Q  232 tggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtct 290  Q
    |||||||||||||| | |||||||   |||||||||||||||  |||| |||| |||||    
T  45413865 tggtgcaccaaacaaccgattgaa---tcaagatatgatagttctatcctatcctgtct 45413920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 36625533 - 36625644
Alignment:
Q  135 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattg 233  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| |||||  ||||||||||||||||||| ||||||||||| |||||  ||| ||||     
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatcatatcctatta 36625632  T
Q  234 gtgcaccaaaca 245  Q
    ||||||||||||    
T  36625633 gtgcaccaaaca 36625644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 2183411 - 2183302
Alignment:
Q  137 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 235  Q
    ||||||||| ||||||||| ||||||||  ||||||||||||||||||   || ||||||||||||| |||||  |||||| ||||||  |  |||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggt 2183312  T
Q  236 gcaccaaaca 245  Q
    ||||||||||    
T  2183311 gcaccaaaca 2183302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 19181421 - 19181521
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||||||| | ||||||||| ||||| |||||||| |||   ||| |||||||||||| ||||||||||||| |||||  ||| | ||||||||||||||    
T  19181421 gttgctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaac 19181520  T
Q  245 a 245  Q
    |    
T  19181521 a 19181521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 43481302 - 43481412
Alignment:
Q  134 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 232  Q
    |||||||||||| ||||||| | | ||||||| | |||||||||||| |||| ||||||| ||| ||||| |||||  |||||| ||||||  |||||||    
T  43481302 ttatgctatcaggttgctaatccaacaaaaacta-ggataaaaataataaaaggtgaataagat-ggattagaaatgagtttaatttatcctttcttatt 43481399  T
Q  233 ggtgcaccaaaca 245  Q
    |||||||||||||    
T  43481400 ggtgcaccaaaca 43481412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 44126112 - 44126013
Alignment:
Q  144 agttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaa 243  Q
    ||||||||||| | ||||||| ||| || | || ||||||| ||||||||||||||||| |||||| |||||| |||||   || ||||| |||||||||    
T  44126112 agttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaataagtttaatttatcatttcctattgctgcaccaaa 44126013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 34666528 - 34666439
Alignment:
Q  134 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 222  Q
    |||||||||||| ||||||||| || ||||   | |||||||||||| |||  | |||||||||| |||| |||||||||||||||||||    
T  34666528 ttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggatatgattagaaataggtttaagttatc 34666439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 26635260 - 26635367
Alignment:
Q  137 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 235  Q
    ||||||||| ||||||||| ||||||||| |||||||| ||||| |||    || |||||||| ||| |||||||||| || |||||  ||| | |||||    
T  26635260 tgctatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggt 26635359  T
Q  236 gcaccaaa 243  Q
    ||||||||    
T  26635360 gcaccaaa 26635367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 24155264 - 24155198
Alignment:
Q  156 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 222  Q
    ||||||||| |||||| |||||| ||||   ||| |||||||||||| ||||||| |||||||||||    
T  24155264 accaaaaactaaggatgaaaatatcaaatgctgagtaggataggattagaaatagctttaagttatc 24155198  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 292
Target Start/End: Complemental strand, 40626588 - 40626432
Alignment:
Q  134 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 232  Q
    |||||||||||| ||| ||||| |||||||   |||||||||||||| |||  |||| |||||||||||| ||||||  ||||| ||||||  || ||||    
T  40626588 ttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctatt 40626489  T
Q  233 ggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 292  Q
    ||||||||||||| | |||||||   ||||||||||||||| |||||||||| |||||||    
T  40626488 ggtgcaccaaacagcagattgaa---tcaagatatgatagttttatcatatcctgtcttc 40626432  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 6452566 - 6452471
Alignment:
Q  149 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||||| | ||||||| |||||| | ||| |||||  |||||||||||| |||| | ||||||||||| |||||  |||||||||||||| |||||    
T  6452566 ctaacccaacaaaaactaaggattagaattacaaagcgtgaataggataagattagtaataggtttaatttatcatatcttattggtgcatcaaac 6452471  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 6457700 - 6457563
Alignment:
Q  150 taaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctg 249  Q
    ||||| ||||||||  ||||||||||||||||||  ||| ||| |||| |||| ||||| | ||||| |||||   |  ||||||||||||||||| | |    
T  6457700 taacccaccaaaaattaaggataaaaataacaaagggtggataagatatgattggaaattgatttaatttatcattttctattggtgcaccaaacaacag 6457601  T
Q  250 attgaatattcaagatatgatagtgttatcatatcatgtct 290  Q
    ||||||   ||| |||||||||||  ||||||||| |||||    
T  6457600 attgaa---tcatgatatgatagttctatcatatcctgtct 6457563  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 18665263 - 18665167
Alignment:
Q  149 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaaca 245  Q
    |||||| ||||||||  |||||||||| |||||||  |||| || ||||  ||| ||||||||||||||||||||  || | ||||||||| |||||    
T  18665263 ctaacccaccaaaaattaaggataaaattaacaaagggtgagtaagatattattagaaataggtttaagttatcctttccttttggtgcacgaaaca 18665167  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 8547443 - 8547542
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| ||||||||||||||||||||  || ||||| ||| ||||||    
T  8547443 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcctttcctattgatgctccaaac 8547542  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 8573796 - 8573873
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 222  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| |||||||||||||||||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatc 8573873  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 291
Target Start/End: Original strand, 18596615 - 18596779
Alignment:
Q  125 gtttgatagttatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 223  Q
    |||||||||||||| ||| | |||||||||| ||||||||| |||||||||| ||| |||  ||   || || ||||||  |||||||||||| |||||     
T  18596615 gtttgatagttatgatattatgttgctaacccaccaaaaactaaggataaaagtaataaagggttggtatgaaaggattaaaaataggtttaaattatca 18596714  T
Q  224 aatcttattggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtctt 291  Q
      ||||| | || || | |||| |  |||||||   |||||||||||||| |||||||||||||||||    
T  18596715 tttcttactagtacatcgaacatcaaattgaat---caagatatgatagttttatcatatcatgtctt 18596779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 129107 - 129183
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttat 221  Q
    ||||||| || | ||||||| || |||||||||||||||  ||||||| |||||||||  ||||  |||||||||||    
T  129107 gttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttat 129183  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 31734412 - 31734323
Alignment:
Q  156 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaaca 245  Q
    ||||||||| ||||||||||||||||||  ||| || ||||| |||| ||||||||||||| |||||   ||||||||||||||||||||    
T  31734412 accaaaaactaaggataaaaataacaaagggtggatgggataagattggaaataggtttaatttatcatttcttattggtgcaccaaaca 31734323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 11066586 - 11066512
Alignment:
Q  149 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 223  Q
    |||||| ||||||||  ||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||||    
T  11066586 ctaacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggattagaaataggtttaagttatcc 11066512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 9028642 - 9028742
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||||||||| | |||||||||||||||| ||| |||||   | ||||||||||||||  |||||||||||| ||||||  |  | ||||||||||||||    
T  9028642 gttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgttggtgcaccaaac 9028741  T
Q  245 a 245  Q
    |    
T  9028742 a 9028742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 22573242 - 22573133
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||| ||||| ||||||||| |||||||| ||| |||||   | |||||||||||||| |||| ||||| || |||||   || | ||||||||||||||    
T  22573242 gttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgcaccaaac 22573143  T
Q  245 acctgattga 254  Q
    | | ||||||    
T  22573142 aacggattga 22573133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 556888 - 556809
Alignment:
Q  145 gttgctaaccaaccaaaaa--ccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 222  Q
    |||||||||| ||||||||  | |||||| | || ||||||  |||||||||||| |||| ||||||||||||| |||||    
T  556888 gttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaataggtttaatttatc 556809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 294
Target Start/End: Complemental strand, 38457844 - 38457694
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatct----tattggtgcacc 240  Q
    |||||||||| |||||| || |||||||||| |||||||| ||||||||||||||||| |||||  |||||| ||||||  |||    ||||| ||||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggattagaaatgagtttaaattatcctttcttatgtattgatgcacc 38457745  T
Q  241 aaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttctt 294  Q
    ||||  | ||||||| ||  ||||||  ||||| ||||||||||||||||||||    
T  38457744 aaacggcggattgaa-at--aagatagtatagttttatcatatcatgtcttctt 38457694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 7038722 - 7038613
Alignment:
Q  135 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattg 233  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| ||||||  |||||| ||||||||| | ||||||||||| |||||  ||| ||||     
T  7038722 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattagtaataggtttaatttatcatatcctatta 7038623  T
Q  234 gtgcaccaaa 243  Q
    ||| ||||||    
T  7038622 gtgtaccaaa 7038613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 292
Target Start/End: Original strand, 48936324 - 48936451
Alignment:
Q  160 aaaaccaaggataaaaataacaaaatgtgaa-taggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaatat 258  Q
    ||||| ||||||||||||||||||  | ||| ||||||||||||  ||| |||||||| |||||   || | ||||||||||||||| | |||||||       
T  48936324 aaaactaaggataaaaataacaaag-gagaagtaggataggattaaaaacaggtttaaattatct--tcctgttggtgcaccaaacaacggattgaaa-- 48936418  T
Q  259 tcaagatatgatagtgttatcatatcatgtcttc 292  Q
     || ||||||||||| |||||||||| |||||||    
T  48936419 -caggatatgatagtcttatcatatcctgtcttc 48936451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 13109812 - 13109739
Alignment:
Q  149 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 222  Q
    |||||| ||||||||| ||||||||||||||||||  ||| |||||||| |||| |||||| ||| || |||||    
T  13109812 ctaacccaccaaaaactaaggataaaaataacaaagggtggataggatatgattagaaatatgttaaacttatc 13109739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 34731376 - 34731276
Alignment:
Q  145 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 244  Q
    |||||||||| | | ||||| |||||| |||||||||||   |  |||||||||||||   ||||||||||  ||||||  || ||||||||||||||||    
T  34731376 gttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgcaccaaac 34731277  T
Q  245 a 245  Q
    |    
T  34731276 a 34731276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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