View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2456_low_25 (Length: 206)
Name: NF2456_low_25
Description: NF2456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2456_low_25 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 4155923 - 4155989
Alignment:
| Q |
25 |
ctcaaaggctcccctaactgtgcctccacacaagcaattgctctaagctccattatagtctgtggtg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4155923 |
ctcaaaggctcccctaactgtgcctccacacaagcaattgctctaagctccattatagtctgtggtg |
4155989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 33380345 - 33380311
Alignment:
| Q |
172 |
ggacctggtgttgctccgtacggtccatatccacc |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33380345 |
ggacctggtgttggtccgtacggtccatatccacc |
33380311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 34984304 - 34984263
Alignment:
| Q |
37 |
cctaactgtgcctccacacaagcaattgctctaagctccatt |
78 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
34984304 |
cctaactgatcctccacacaagcaattgctttaagctccatt |
34984263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University