View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2456_low_2_N (Length: 484)
Name: NF2456_low_2_N
Description: NF2456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2456_low_2_N |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 30514882 - 30515039
Alignment:
| Q |
109 |
aaccggaggatccagaccatccaaga---ggaatccaatgataacttcttctaatttatttacaaatgtccttaaagaacaaacggcctgataacaagtt |
205 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30514882 |
aaccggaggatccggaccatccaagaagaggaatccaatgataacttcttctaatttgtttacaaatgtccttaaagaacaaacggccagataacaagtt |
30514981 |
T |
|
| Q |
206 |
aagaactaaaacctttaacgtactctataaatactaattcataacattgattcaggta |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30514982 |
aagaactaaaacctttaacgtactctataaatactaattcataacattgattcaggta |
30515039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 16989946 - 16989825
Alignment:
| Q |
269 |
atatatatatagaaagccaagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacg |
368 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |
|
|
| T |
16989946 |
atatatatatagaaagccaagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctaccaaccttataaaacaagcagtggcaag |
16989847 |
T |
|
| Q |
369 |
gaacaagtagaaaataagcaca |
390 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
16989846 |
gaacaagtagaaaataagcaca |
16989825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 397 - 474
Target Start/End: Original strand, 30515043 - 30515120
Alignment:
| Q |
397 |
atacatttgattctaaaatacatcgtaagtccacaaatttgagcgttgaagtgtcttcacatttatcaccctcctatg |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30515043 |
atacatttgattctaaaatacatcgtaagtccacaaatttgagcgttgaagtgtcttcacaaatatcaccctcctatg |
30515120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 263 - 396
Target Start/End: Original strand, 2920676 - 2920809
Alignment:
| Q |
263 |
atcagcatatatatatagaaagccaagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagt |
362 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2920676 |
atcagcataaatatatagaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaacaaagcagt |
2920775 |
T |
|
| Q |
363 |
ggcacggaacaagtagaaaataagcacagataaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
2920776 |
ggcacggaacaagtagaaaataagcacatataaa |
2920809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 394
Target Start/End: Original strand, 18246325 - 18246416
Alignment:
| Q |
303 |
aaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataagcacagata |
394 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18246325 |
aaaagagctagcagttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaatgaacaagtagaaaataagcacagata |
18246416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 287 - 394
Target Start/End: Original strand, 31234507 - 31234614
Alignment:
| Q |
287 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataag |
386 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31234507 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
31234606 |
T |
|
| Q |
387 |
cacagata |
394 |
Q |
| |
|
|||||||| |
|
|
| T |
31234607 |
cacagata |
31234614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 287 - 394
Target Start/End: Original strand, 37242344 - 37242451
Alignment:
| Q |
287 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataag |
386 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37242344 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
37242443 |
T |
|
| Q |
387 |
cacagata |
394 |
Q |
| |
|
|||||||| |
|
|
| T |
37242444 |
cacagata |
37242451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 287 - 394
Target Start/End: Original strand, 1259056 - 1259163
Alignment:
| Q |
287 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataag |
386 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1259056 |
aagcaccggaagtgctaaaagagctagttgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
1259155 |
T |
|
| Q |
387 |
cacagata |
394 |
Q |
| |
|
|||||||| |
|
|
| T |
1259156 |
cacagata |
1259163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 371
Target Start/End: Complemental strand, 34873357 - 34873273
Alignment:
| Q |
287 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaa |
371 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34873357 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaa |
34873273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34899972 - 34899903
Alignment:
| Q |
1 |
tcaacttgaaagttgaaactaccaaactttatctatatgcatataaacacatctctctttagttcatctc |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34899972 |
tcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctc |
34899903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University