View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2456_low_3 (Length: 482)
Name: NF2456_low_3
Description: NF2456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2456_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 30514882 - 30515039
Alignment:
| Q |
109 |
aaccggaggatccagaccatccaaga---ggaatccaatgataacttcttctaatttatttacaaatgtccttaaagaacaaacggcctgataacaagtt |
205 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30514882 |
aaccggaggatccggaccatccaagaagaggaatccaatgataacttcttctaatttgtttacaaatgtccttaaagaacaaacggccagataacaagtt |
30514981 |
T |
|
| Q |
206 |
aagaactaaaacctttaacgtactctataaatactaattcataacattgattcaggta |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30514982 |
aagaactaaaacctttaacgtactctataaatactaattcataacattgattcaggta |
30515039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 388
Target Start/End: Complemental strand, 16989944 - 16989825
Alignment:
| Q |
269 |
atatatatagaaagccaagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacgga |
368 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |
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| T |
16989944 |
atatatatagaaagccaagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctaccaaccttataaaacaagcagtggcaagga |
16989845 |
T |
|
| Q |
369 |
acaagtagaaaataagcaca |
388 |
Q |
| |
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|||||||||||||||||||| |
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| T |
16989844 |
acaagtagaaaataagcaca |
16989825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 395 - 472
Target Start/End: Original strand, 30515043 - 30515120
Alignment:
| Q |
395 |
atacatttgattctaaaatacatcgtaagtccacaaatttgagcgttgaagtgtcttcacatttatcaccctcctatg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30515043 |
atacatttgattctaaaatacatcgtaagtccacaaatttgagcgttgaagtgtcttcacaaatatcaccctcctatg |
30515120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 271 - 394
Target Start/End: Original strand, 2920686 - 2920809
Alignment:
| Q |
271 |
atatatagaaagccaagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaac |
370 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
2920686 |
atatatagaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaacaaagcagtggcacggaac |
2920785 |
T |
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| Q |
371 |
aagtagaaaataagcacagataaa |
394 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
2920786 |
aagtagaaaataagcacatataaa |
2920809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 18246325 - 18246416
Alignment:
| Q |
301 |
aaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataagcacagata |
392 |
Q |
| |
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|||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18246325 |
aaaagagctagcagttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaatgaacaagtagaaaataagcacagata |
18246416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 31234507 - 31234614
Alignment:
| Q |
285 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataag |
384 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31234507 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
31234606 |
T |
|
| Q |
385 |
cacagata |
392 |
Q |
| |
|
|||||||| |
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|
| T |
31234607 |
cacagata |
31234614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 37242344 - 37242451
Alignment:
| Q |
285 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataag |
384 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37242344 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
37242443 |
T |
|
| Q |
385 |
cacagata |
392 |
Q |
| |
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|||||||| |
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|
| T |
37242444 |
cacagata |
37242451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 1259056 - 1259163
Alignment:
| Q |
285 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaacaagtagaaaataag |
384 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1259056 |
aagcaccggaagtgctaaaagagctagttgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
1259155 |
T |
|
| Q |
385 |
cacagata |
392 |
Q |
| |
|
|||||||| |
|
|
| T |
1259156 |
cacagata |
1259163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 34873357 - 34873273
Alignment:
| Q |
285 |
aagcacaggaagtgctaaaatagctagctgttacaaccaaacaacaggttcctgccaaccttataaaacaagcagtggcacggaa |
369 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
34873357 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaa |
34873273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34899972 - 34899903
Alignment:
| Q |
1 |
tcaacttgaaagttgaaactaccaaactttatctatatgcatataaacacatctctctttagttcatctc |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
34899972 |
tcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctc |
34899903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 35262775 - 35262831
Alignment:
| Q |
263 |
atcagcatatatatagaaagccaagcacaggaagtgctaaaatagctagctgttaca |
319 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||||| || |||||||||| |
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|
| T |
35262775 |
atcagcatatatatgaaaagccacgcacaagaagtgctaaaatggcaagctgttaca |
35262831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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