View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2456_low_4 (Length: 413)
Name: NF2456_low_4
Description: NF2456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2456_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 48 - 308
Target Start/End: Complemental strand, 42943134 - 42942882
Alignment:
| Q |
48 |
ttaacttgtatgttcccttgggaataannnnnnnnacttgaacttgttgatgcacatgcttctttccaagtagcaattagagcctaagaaatgaaacaca |
147 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42943134 |
ttaacttgtatgttcccttgggaatcaaaatttt-acttgaacttgttgatgcacatgcttctttccaagtagcaattagagcctaagaaatgaaacaca |
42943036 |
T |
|
| Q |
148 |
caatcttatgaagtgaaaggaaatgagagaataaccaaaattcgaaaaacaattgttacttgtgttacaagataatgtnnnnnnnnnnnntaaattcatg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
42943035 |
caatcttatgaagtgaaaggaaatgagagaataaccaaaattcgaaaaacaattg----ttgtgttacaagataatgt---aaaaataaataaaatcatg |
42942943 |
T |
|
| Q |
248 |
tttaagttttttaattttagtgtatactctcatcacctcggttatttctccctcagatatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42942942 |
tttaagttttttaattttagtgtatactctcatcacctcggttatttctcccacagatatt |
42942882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University