View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2456_low_6 (Length: 334)
Name: NF2456_low_6
Description: NF2456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2456_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 47691539 - 47691644
Alignment:
| Q |
162 |
gttcatcaaacaagtttatttaatcatataaacttataagttataaattatcctctataaactcaaaattttgtattgtcagattctaactcatttacca |
261 |
Q |
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| T |
47691539 |
gttcatcaaacaagtttatttaatcatataaacttataagttataaattatcctctataaactcaaaattttgtattgtcagattctaactcatttacca |
47691638 |
T |
|
| Q |
262 |
aactaa |
267 |
Q |
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|||||| |
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| T |
47691639 |
aactaa |
47691644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 34899909 - 34899975
Alignment:
| Q |
262 |
aactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaaccttcaagttgagat |
328 |
Q |
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| T |
34899909 |
aactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 37811433 - 37811392
Alignment:
| Q |
166 |
atcaaacaagtttatttaatcatataaacttataagttataa |
207 |
Q |
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|||| |||||| | |||||||||||||||||||||||||||| |
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| T |
37811433 |
atcatacaagtctttttaatcatataaacttataagttataa |
37811392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 10828706 - 10828751
Alignment:
| Q |
184 |
atcatataaacttataagttataaattatcctctataaactcaaaa |
229 |
Q |
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|||||||||||||||||||||| | |||||| ||||||||| |||| |
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| T |
10828706 |
atcatataaacttataagttatgatttatccactataaactaaaaa |
10828751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 15745311 - 15745371
Alignment:
| Q |
59 |
caattaagttaataagagtaaattgagagagaaaaaatgataagttttaagctataagttc |
119 |
Q |
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|||||||| |||| || |||| |||||||||| ||||||||| ||| ||||||||||||| |
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| T |
15745311 |
caattaagataatgagggtaagttgagagagagaaaatgatatgttaaaagctataagttc |
15745371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 1571000 - 1570940
Alignment:
| Q |
59 |
caattaagttaataagagtaaattgagagagaaaaaatgataagttttaagctataagttc |
119 |
Q |
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|||||||| |||| || |||| |||||||||| ||||||||| ||| ||||||||||||| |
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| T |
1571000 |
caattaagataatgagggtaagttgagagagagaaaatgatatgttaaaagctataagttc |
1570940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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